Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1151 ATGTCAAGTAATGGATGCAGCATAGTTTGGTTTAGAAGGGATCTGAGGGTGGAGGATAACCCAGCACTTATGGCAGGAGTAAGAGCAGGAGCTGTGGTTGCTGTTTTCATATGGGCTCCTGAAGAAGAAGGTCAATATCAACCTGGAAGGGTTTCAAGGTGGTGGCTGAAACAAAGTTTGGCTTATCTTGATTCATCTTTGAGAAATCTTGGCACTCCTCTTATCACTAAGAGATCCACTGATAGTGTTTCTGCTCTATTAGAAGTTGTTAAGTCCACTGGTGCTACTCAACTTTTCTTTACCCATTTATATGATCCATTGTCACTTATCAGGGATCACCGAGCAAAGGAGGTTCTGAGTGCTCATGGTATAACAGTACGTTCCTTTAATTCGGACTTATTGTATGAACCATGGGATGTCAATGATGAACATGACCAACCATTCACAACTTTTGATGCTTTTTGGGAAAGATGCCTTAACATGCCTTATGACCCACCAGCACCTTTTCTCCCACCTAAAAGGATTATTCCAGGAGATATATCAAGGTGCCCTTGTGATGCATTGATGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTGGCTCGAGCATGGTCGCCCGGGTGGAGCAATGCGGACAAGGCCTTGACAACATTCATAAACGGTCCATTAATTGAGTATTCCGAAAATCGCAGGAAGGCTGACAGTGCCACAACCTCATTTCTCTCCCCTCATTTGCATTTTGGTGAGGTGAGTGTGAAGAAAGTTTTCCATCTTGTTCGGATTAAGCAAGTGCTCTGGGCCAATGAAGGAAATAAGGCTGGTGAGGAAAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTATTCAAGGTACATAAGTTTCAACCATCCCTATAGTCATGAAAGGCCTCTTCTAGGCCACCTCAAGTTTTTTCCTTGGGTAGTCAATGAAGGATATTTTAAGGCATGGAGACAAGGCAGAACAGGCTACCCTTTGGTGGATGCTGGCATGAGAGAGTTGTGGGCAACTGGTTGGCTTCATGATCGGATACGAGTCGTAGTTTCGAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTCTGGGATACCCTCTTGGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATAACTGGTACTCTACCTGATGGTCGCGAATTTGACAGAATCGATAATCCACAGGTGGAGCTTCTTCTGTCAAATTTTGAGGGATACAAATTTGATCCCAATGGAGAATATGTACGACGCTGGCTTCCTGAGCTTTCCAGATTACCAACTCAATGGATACATCATCCATGGAACGCACCCGAATCGGTAATACAAGCTGCTGGTATTGAACTTGGGTCAAATTACCCTCTTCCAATTGTGGGAATAGACGAAGCGAAAGCAAGGTTGCAAGAAGCACTAATACAGATGTGGCAACAAGAAGCAGCTTATAGAGCTGCAACTGAAAATGGAACTGAGGAAGGGCTTGGAGAGTCATTTGAGTCAACTCCAATTGCTTTTCCTGAAGACACACAAATGGAGGAAAGACATGAACCTGTTAGGAACAATCCCCCGGCTGCAGCTACTCGGCGCTACGAGGATCAGATGGTGCCAAGTATCACTTCTTCCTTGGTGAGAGTAGAAGGGGAAGAAACTTCTTTGGATGTTCAAAACTCAACAGAAGAGAGCAGAGCTGAAGTTCCAATAAATGTGAATGCACAACAAAATGCAAGAGAGACAGTGTTTCACACTGCTAATAGAAACACTCAACTACAGCATAATAACAATAATACAATGTGGTTAAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGGGATGGAGGAGAAGTTCCGGTATGGTCTCCGACGGCTTCTAGTTACCCAGAGCCATTTGTAGATGATGAAAATGGTTTAGGAGCCAGTTCATCTTACTTGCAGAGGCATCCTCAGTCTCACCAATTGATGAATTGGACAAGGTTACCTCAAACTGGGTGA 2061 0.4391 MSSNGCSIVWFRRDLRVEDNPALMAGVRAGAVVAVFIWAPEEEGQYQPGRVSRWWLKQSLAYLDSSLRNLGTPLITKRSTDSVSALLEVVKSTGATQLFFTHLYDPLSLIRDHRAKEVLSAHGITVRSFNSDLLYEPWDVNDEHDQPFTTFDAFWERCLNMPYDPPAPFLPPKRIIPGDISRCPCDALMFEDESEKASNALLARAWSPGWSNADKALTTFINGPLIEYSENRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQVELLLSNFEGYKFDPNGEYVRRWLPELSRLPTQWIHHPWNAPESVIQAAGIELGSNYPLPIVGIDEAKARLQEALIQMWQQEAAYRAATENGTEEGLGESFESTPIAFPEDTQMEERHEPVRNNPPAAATRRYEDQMVPSITSSLVRVEGEETSLDVQNSTEESRAEVPINVNAQQNARETVFHTANRNTQLQHNNNNTMWLRNAAEDSTAESSSSTRRERDGGEVPVWSPTASSYPEPFVDDENGLGASSSYLQRHPQSHQLMNWTRLPQTG 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1151 686 PANTHER CRYPTOCHROME 1 610 IPR002081 -
Lal18g1151 686 Pfam Blue/Ultraviolet sensing protein C terminal 518 631 IPR020978 -
Lal18g1151 686 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Lal18g1151 686 Gene3D - 134 293 - -
Lal18g1151 686 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Lal18g1151 686 Coils Coil 477 497 - -
Lal18g1151 686 MobiDBLite consensus disorder prediction 619 686 - -
Lal18g1151 686 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Lal18g1151 686 Gene3D HUPs 8 206 IPR014729 -
Lal18g1151 686 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 495 IPR036134 -
Lal18g1151 686 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 488 IPR014134 GO:0009785|GO:0009882
Lal18g1151 686 Pfam FAD binding domain of DNA photolyase 283 487 IPR005101 -
Lal18g1151 686 MobiDBLite consensus disorder prediction 661 686 - -
Lal18g1151 686 PANTHER CRYPTOCHROME-1 1 610 - -
Lal18g1151 686 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Lal18g1151 686 PRINTS DNA photolyase signature 332 348 IPR002081 -
Lal18g1151 686 PRINTS DNA photolyase signature 352 370 IPR002081 -
Lal18g1151 686 PRINTS DNA photolyase signature 391 405 IPR002081 -
Lal18g1151 686 Pfam DNA photolyase 7 165 IPR006050 -
Lal18g1151 686 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1151 Lal-Chr18 14417259 14420567 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1151 K12118 - gmx:100786551 1187.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1151 18 14417259 14420567 Lal18g1151 18 14417259 14420567 ECH
Lal18g1151 18 14417259 14420567 Lal6g0474 6 3012182 3016197 LSH
Lal18g1151 18 14417259 14420567 Lal4g0367 4 2495527 2499557 PCT
Lal4g0367 4 2495527 2499557 Lal18g1151 18 14417259 14420567 PCT