Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0367 ATGCATGTGTGTGTAAATAGTTTCTGTAGAGATATGTCAAGTGGTGGATGCAGCATAGTGTGGTTCAGGAGAGATCTAAGGGTGGAAGATAATCCAGCACTGAGTGCAGCAGTTAGAGCTGGAACTGTGGTTGCACTTTTCATATGGGCACCTGAAGAAGAGGGTCAATATCAACCTGGTAGAGTTTCTAGGTGGTGGCTTAAGCAAAGTTTGGCTCAACTTGATTCCTCTCTTAGAAATCTTGGTACTCCTCTTATTACAAAGAGATCCACTAATAGTGTTTCATCTCTACTTGATGTTGTTAAGTCCACTGGAGCTACTCAACTCTTTTTTAACCACTTATATGATCCCTTGTCACTTATCAGGGATCACCAAGCAAAGGAGATTCTGACTTCTGAAGGCGTTACGGTATGTTCCTTCAACGCGGATTTGTTATATGAACCATGGGATGTTAATGATGCCTGTGGCCAACCATTCACAACTTTTGATGCCTTTTGGAAAAGATGCCTTAGCATGCCTTATGACCCAGACTCACCTCTTCTCCCTCCTAAGAGGATTATTCCAGGTGATGTGTCAAGGTGCCTTTGTGATGCATTGGTGCTTGAAGATGAATTAGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCATGGTCACCCGGGTGGAGCAACGCTAACAAGGCTTTGGCAACATTCATAAATGGTCCACTGCTTGAGTATTCAAAAAATTGCAAGAAGGCTGATAGTGCCACAACTTCATTTCTTTCCCCCCATTTGCATTTTGGTGAGGTGAGTGTGAAAAAGGTCTTCCATCTTGTCTGCATCAAGCAAATTTTATGGGCAAACGAAGGAAACAAGGCCGGTGAAGAAAGCGTTAACTTGTTCCTCCAGTCTATTGGCCTTAGAGAGTATTCAAGGTACATTTGTTTCAACCACCCTAATAGTCATGAAAGGCCTCTTCTAGGACACCTTAAGTTCTTTCCTTGGGTAGTGAATGAAGGCTATTTTAAGGCATGGAGGCAAGGCAGAACTGGTTACCCATTGGTGGATGCTGGCATGAGGGAGTTGTGGGCCACTGGTTGGCTGCACGATCGTATACGTGTCGTGGTTTCCAGTTTCTTTGTGAAGGTTTTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGATACCCTCTTGGATGCAGATCTTGAGAGTGATGCTCTCGGTTGGCAGTACATATCTGGTTCTCTCCCCGATGGCCGTGAATTGGACCGAATAGATAATCCACAGGTGCACATGCTTTTTCGATGGGCAATTGGATTGAATTTTGAGATTGTGATTATTAACATTGGTACTGACTTTTCGGAGTTAAGTCCTATTTTTGAGGGATACAAATTTGATCCAAAAGGAGAATATGTACGGCGCTGGCTTCCAGAGCTTGTTAGATTACCAACTGAATGGATACATGATCCATGGAATGCATCGGAAGCGGTACTCCAAGCTGCTGGAGTTGAGCTTGGATCAAACTATCCCCTTCCAATTGTAGGAATAGACGCAGCAGAAACCAGATTAGAGAAAGCGCTATCAAAAATGTGGCGACTAGAAGCAGCTTCAAGAGCTGTCACTGAAAATGGAACCGATGAAGGGCTTGGTGACTCATCGGAATCAACTGCTGTTGCTTTTCCTCAAGACATCCAAATGGAGGAAAGTGATGAACCTGCAAGGAACAATCATCCTCCCGTTGCTCGACGCTACCAGGATCAGATGGTTCCAAGTATCACTTCTTCCCTGGCCAGAGTTGAGGGAAACTCGGCGGAAGAAAGCAGAGCTGAAGTACCAATAAATGTAAACACACAACAAAATGCAAGAGAGACATTGAATGGAAGGATGTTGCAGACTGCTCAAAGAAATGCACAACTACAGTACAATACTAGAATGCACATGAGAAATGCAGCTGAAGATTCCGCGGTAGAATCGTCAAGTAGTACTAGTAGGAGGAGGGAAAGAGATGGAGGTATAGTTCCGGAATGGTCTCCTTCGGCTTCTAGTTACTCAGAGCAGTTAGTAGGAGATGAAAATGGTATAGCTAGCAGTTCATCTTACTTGCAAAGGCATCCTCAGTCTCACCAATTGCTGAATTGGAGGGAACTACCTCAGACCGGGTGA 2148 0.4441 MHVCVNSFCRDMSSGGCSIVWFRRDLRVEDNPALSAAVRAGTVVALFIWAPEEEGQYQPGRVSRWWLKQSLAQLDSSLRNLGTPLITKRSTNSVSSLLDVVKSTGATQLFFNHLYDPLSLIRDHQAKEILTSEGVTVCSFNADLLYEPWDVNDACGQPFTTFDAFWKRCLSMPYDPDSPLLPPKRIIPGDVSRCLCDALVLEDELEKASNALLARAWSPGWSNANKALATFINGPLLEYSKNCKKADSATTSFLSPHLHFGEVSVKKVFHLVCIKQILWANEGNKAGEESVNLFLQSIGLREYSRYICFNHPNSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQVHMLFRWAIGLNFEIVIINIGTDFSELSPIFEGYKFDPKGEYVRRWLPELVRLPTEWIHDPWNASEAVLQAAGVELGSNYPLPIVGIDAAETRLEKALSKMWRLEAASRAVTENGTDEGLGDSSESTAVAFPQDIQMEESDEPARNNHPPVARRYQDQMVPSITSSLARVEGNSAEESRAEVPINVNTQQNARETLNGRMLQTAQRNAQLQYNTRMHMRNAAEDSAVESSSSTSRRRERDGGIVPEWSPSASSYSEQLVGDENGIASSSSYLQRHPQSHQLLNWRELPQTG 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0367 715 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 18 189 IPR036155 -
Lal4g0367 715 MobiDBLite consensus disorder prediction 644 715 - -
Lal4g0367 715 Pfam DNA photolyase 18 173 IPR006050 -
Lal4g0367 715 PANTHER CRYPTOCHROME-1 453 636 - -
Lal4g0367 715 PANTHER CRYPTOCHROME-1 12 425 - -
Lal4g0367 715 MobiDBLite consensus disorder prediction 672 715 - -
Lal4g0367 715 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 17 426 IPR014134 GO:0009785|GO:0009882
Lal4g0367 715 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 203 527 IPR036134 -
Lal4g0367 715 Gene3D - 145 304 - -
Lal4g0367 715 Gene3D HUPs 19 217 IPR014729 -
Lal4g0367 715 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 312 543 - -
Lal4g0367 715 Pfam FAD binding domain of DNA photolyase 294 424 IPR005101 -
Lal4g0367 715 Pfam FAD binding domain of DNA photolyase 451 521 IPR005101 -
Lal4g0367 715 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 16 145 IPR006050 -
Lal4g0367 715 ProSitePatterns DNA photolyases class 1 signature 2. 363 382 IPR018394 -
Lal4g0367 715 MobiDBLite consensus disorder prediction 591 615 - -
Lal4g0367 715 ProSitePatterns DNA photolyases class 1 signature 1. 343 355 IPR018394 -
Lal4g0367 715 PRINTS DNA photolyase signature 154 170 IPR002081 -
Lal4g0367 715 PRINTS DNA photolyase signature 343 359 IPR002081 -
Lal4g0367 715 PRINTS DNA photolyase signature 363 381 IPR002081 -
Lal4g0367 715 PRINTS DNA photolyase signature 402 416 IPR002081 -
Lal4g0367 715 Coils Coil 511 531 - -
Lal4g0367 715 Pfam Blue/Ultraviolet sensing protein C terminal 553 657 IPR020978 -
Lal4g0367 715 PANTHER CRYPTOCHROME 12 425 IPR002081 -
Lal4g0367 715 PANTHER CRYPTOCHROME 453 636 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0367 Lal-Chr4 2495527 2499557 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0367 K12118 - gmx:100797839 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0367 4 2495527 2499557 Lal4g0367 4 2495527 2499557 ECH
Lal18g1151 18 14417259 14420567 Lal4g0367 4 2495527 2499557 PCT
Lal6g0474 6 3012182 3016197 Lal4g0367 4 2495527 2499557 PCT
Lal4g0367 4 2495527 2499557 Lal18g1151 18 14417259 14420567 PCT
Lal4g0367 4 2495527 2499557 Lal6g0474 6 3012182 3016197 PCT