Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0445 ATGCGTGTCACCGTGGATCTAGGGTTTTCGGGATTGGTATTTCCCTCTCTTGTTTGCGTCGTTGTTTTGGTGATCGGCTTCGTTGTCCCCCGCAAATGGAGGCAATCGGTGGCGAGGGCTGAGGAGGTGAAGAGGCTCTTGGATTTCGCGAAGGAGGAGGCTACTAGGGTTGAGAATGAAGCTTCGTATCAATACGCTGCCGTTTTCGTCCCTAAGAACAATCAATGCGCTGTGTGCTTCTGCCCCACCACAACGCGTTCTGGTAAGTGTCAAATCCTTCATTGGCGTCTAGGTCACAAAGATCAATGCCATCCTCCCATCGCAGCTCGCGAAACTGATGGTCTGAGAAGTGATATTGGCAATAAGGTAGTGGAGCCAGACTATCATGGAATTCGTGATGATAAGTTTCAGGTGGAGGGCACAGAGTATAAATCATCCTCTAAGAAACTCCCATCATCTGATAGCATAAAAATTGAGTCGAATGCATGGAGAAATGTTACGGATACTAGTTCAGAATTATCTAGTAAATCATTTTCTGGATTCTCTGCTTCCAATAGTGCCACTGAATCATCTGATGATTCCTCTGTTTGTGAGAGTATGACTTCAAATAAGCATGAGAAATCAGAAGGGCATGTTTTTGCTGATCCGACCCTTGTCATTGCTGACACCACTTCAAATAATGATAGCAAGGATGTAGCCATTCCTTTGTCACCTAAGTTTGCTAGTTTAGTTGATTCGGTAGATGGTTTTTCTACAAAGGATAAATTAAACCAGGTTAGACCTGGTTCTGGTAAAGAAGAGAGTAAGCTCACATCAAATGGTAGTTCTGGTTTGAGTATGCGTAAGAGGGCTACAATTGAGCCTTCTATGGTGTCTTCTGGATTTTGGGATAAGACTCATGCTCCGAGAGGGACAAAAGATGATACCAGTAGTGTCACTCTTCAATCACACATTAATGATTCTCTTCCAAAGTCTGTTCGGAATAACATGCCACGTACAAGTTTGGCATCTTCAGAGAATGAAGGCATGGATTCCTCAGGTTGCGCCGAAGCTTCAAGCAACCATAACTTGCAATCGGTTGTCTCTAAGGCATCAAATCACGTAATGAACAACCATGGCAGCAACTTGAAGTCAGCTGAAATTAAGTCTCTACCGCATGCATCTGCCAATACCAATTTAGCTTCTAGAACTAAAGAGCTGTCACATTATGAAACAAAATGTGGGGATAATGGCAATCAATCTGGCACTTCTACTTCAACTCAGGGTGCCACCTCTCCTCTAAATTCTAACAATGGTCTAAAAACATCTGTACTGAAAGTTGTTGATCAGTTTAGAGGATCAAAGTCGTCGAAACACTTCCCACAAGCTGTTGGTAGTGATATTGGTAGAATAATCAATGACAAGGGTCTTTTTCCGTATGATTTTTTTGTCAAGCTTTATACCTGGAACAGAATGGAGTTGCTACCATTTGGTCTTATAAATTGTGGAAACAGCTGTTATGCTAATGCTGTTCTCCAGTGTTTAGCATTTACACCACCCCTGACTGCTTATTTGTTTCAAGGACTTCATTCTAGATCATGTGCAAACAAAAAATGGTGTTTTATCTGTGAGTTTCAAAATTTGATTTTGAAGTCAAAAGACACAAAATCTCCCCTATCTCCTATGGGCATACTCTCTCAACTACATAATATTGGGAGTCAACTTGGTAATGGTAGAGAAGAAGATGCACACGAATTTCTAAGGCTTACTGTTGAGACAATGCAATCTGTTTGCCTCATGGAAGCTGGGGTTTATGCTTCGGAATCATTGAAAGAGGAAACTAATTTAATTGGTCTAACATTTGGAGGCTATCTTCGATCAAAGATACAATGCATTAAATGCGGAGGCAAATCTGAGTGCCAAGAGAGGATGATGGATCTTACTGTTGAGATAGAAGGGGGGGTAACAACCCTGGAGGAGGCTCTTCGAAGATTTACTAGCACTGAGACTCTGGATGGCGAAAACAAGTACCATTGTATTAGGTGTAAATCTTATGAGATGGCCAAGAAAAAATTGACAATTTCAGAGGCCCCTAATGTTCTTACAATTGCATTGAAGAGATTTAAGTCTGGAAAATTTGGGAAGCTCAATAAGCCTATTCGATTTCCTGAAATACTTGACTTGGCACCTTTCATGAGTGGGACTAGTGATAGATCACCTATATACAGGCTTTATGGGGTAGTTGTTCACTTGGATACTATGAATGCTGCCTTTTCAGGTCACTATGTTTGCTATGTGAAGAATTTCCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTAACAGCTGTTGAGTTAGACAGAGTCTTAACAAAAGGAGCATACGTTCTTCTTTATGCAAGGTGCTCACCAAGGGCCCCAAGATCAATCAGAAACAGGATAGTATCCTCGGATTCTAAAAGCAAAGTTAATGGAAAGACTGTTACAATGAAAGCAAGACTATCTTCTACAGATTCTGGTGCCTCTGAATTCATGATTAATTCAATTTATCCAGATGGTTCACCCACCTTCGAGACCCTCCATTCAAAGTTTGACCACATGAAAAGGATTTTGGAGGAAGACTCATCTAGTGATAATGCATCCCTCATCAGCAACAACTCTGATGAAGGTTCTTGCAGTACTGATATCACTCGTGATTCAAGCGGTACTGATGACTTTGGCGATTATACTTTTTGGTGA 2718 0.4139 MRVTVDLGFSGLVFPSLVCVVVLVIGFVVPRKWRQSVARAEEVKRLLDFAKEEATRVENEASYQYAAVFVPKNNQCAVCFCPTTTRSGKCQILHWRLGHKDQCHPPIAARETDGLRSDIGNKVVEPDYHGIRDDKFQVEGTEYKSSSKKLPSSDSIKIESNAWRNVTDTSSELSSKSFSGFSASNSATESSDDSSVCESMTSNKHEKSEGHVFADPTLVIADTTSNNDSKDVAIPLSPKFASLVDSVDGFSTKDKLNQVRPGSGKEESKLTSNGSSGLSMRKRATIEPSMVSSGFWDKTHAPRGTKDDTSSVTLQSHINDSLPKSVRNNMPRTSLASSENEGMDSSGCAEASSNHNLQSVVSKASNHVMNNHGSNLKSAEIKSLPHASANTNLASRTKELSHYETKCGDNGNQSGTSTSTQGATSPLNSNNGLKTSVLKVVDQFRGSKSSKHFPQAVGSDIGRIINDKGLFPYDFFVKLYTWNRMELLPFGLINCGNSCYANAVLQCLAFTPPLTAYLFQGLHSRSCANKKWCFICEFQNLILKSKDTKSPLSPMGILSQLHNIGSQLGNGREEDAHEFLRLTVETMQSVCLMEAGVYASESLKEETNLIGLTFGGYLRSKIQCIKCGGKSECQERMMDLTVEIEGGVTTLEEALRRFTSTETLDGENKYHCIRCKSYEMAKKKLTISEAPNVLTIALKRFKSGKFGKLNKPIRFPEILDLAPFMSGTSDRSPIYRLYGVVVHLDTMNAAFSGHYVCYVKNFQNKWFKVDDSVVTAVELDRVLTKGAYVLLYARCSPRAPRSIRNRIVSSDSKSKVNGKTVTMKARLSSTDSGASEFMINSIYPDGSPTFETLHSKFDHMKRILEEDSSSDNASLISNNSDEGSCSTDITRDSSGTDDFGDYTFW 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0445 905 Gene3D Cysteine proteinases 484 806 - -
Lal6g0445 905 MobiDBLite consensus disorder prediction 253 279 - -
Lal6g0445 905 MobiDBLite consensus disorder prediction 172 198 - -
Lal6g0445 905 SUPERFAMILY Cysteine proteinases 489 794 IPR038765 -
Lal6g0445 905 Coils Coil 40 60 - -
Lal6g0445 905 MobiDBLite consensus disorder prediction 868 892 - -
Lal6g0445 905 MobiDBLite consensus disorder prediction 397 431 - -
Lal6g0445 905 MobiDBLite consensus disorder prediction 294 356 - -
Lal6g0445 905 MobiDBLite consensus disorder prediction 306 356 - -
Lal6g0445 905 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 22 904 - -
Lal6g0445 905 MobiDBLite consensus disorder prediction 172 209 - -
Lal6g0445 905 MobiDBLite consensus disorder prediction 869 892 - -
Lal6g0445 905 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 491 506 IPR018200 GO:0004843|GO:0006511
Lal6g0445 905 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 22 904 - -
Lal6g0445 905 Pfam Ubiquitin carboxyl-terminal hydrolase 490 792 IPR001394 GO:0004843|GO:0016579
Lal6g0445 905 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 490 795 IPR028889 -
Lal6g0445 905 MobiDBLite consensus disorder prediction 406 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0445 Lal-Chr6 2807004 2812544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0445 374 836 Miscellaneous Gene Families AT4G31670 43.041 3.89e-123 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0445 K11855 - gmx:100782303 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0445 6 2807004 2812544 Lal6g0445 6 2807004 2812544 ECH
Lal18g1178 18 14673649 14679501 Lal6g0445 6 2807004 2812544 LSH
Lal22g0418 22 2706183 2711768 Lal6g0445 6 2807004 2812544 LSH