Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0418 ATGCGTGTCACCGTGGATCTAGGGTTTTCTATCCTGGTACTTACTTGTCTGGTTTGCGTTGTTGTTTTGGTGATCGGATTCGTCGTCCGCCGCAAATGGATGCGCGCGGTGGCGAGGACAGAGGAGGTCAAGAGGCTCTTGGATTTCGCGAAGGAGGAGGCTGCTAGGGTTGAGAACGAAGCTTCGTACCGATACGTTGCCGTTTTGGTCGCTAAGAATAATCAATGCGCCGTGTGCTTCTGCCCAACTACCACACGGTGCGCGCGGTGCAAAGCCGTGCATTACTGTTCTGGTAAGTGCCAGATCCTCCATTGGCGGAAAGGTCACAAAGAAGAATGCCATCCTCCCAACACAGCTTCCGAAACTGATGATCTGATAGGTGATATCGGAAAGAAGGTAACAGAGCAAGGCTACCGTGGAGTCCACAATGATATGGTTCAGGTGGAGAGCACGGAGTATAAAACTTCCTATAAAAAACTCCCATCATCTGATAACATAAGAGTTGAATCAAATACAAAAAATGTTATAGACTCTAACTCGGAATTATCTAGTAACTCATTTTCTGGATTCTCGGCTTCCAATAGTTCCGGTGAATCATCTGATGATTCCTCTGTCTGCGATAGTATGACCTCAAATGAGCATGGGAGATCAGAGGGACATGTTTTTGCTGATCCATCCCCTGTCATTTCTGATACCATTTCAAATGACGATAGCAAGGGTAGAGTCATTCCTCTGTCACCTAAGTTTGCTAGTTTAGTTGATTCAGTAAAGGGTTTTTCTACAAAGAACAAATTAAACCAGGTTAGACCTGTATTTGGCAAAGAAGAGAGTAAGCTCACATTTAATGGTAGTTATGGTTTGAGTATGCGGAAGACGGTTACAATTGAGCCTTCTTCAGTGTCTTCTGGATTCTGGGATAAAACTCATGCTCCCAGAGGGACAAAAGATGATGCAAGTAGTGACTCTCTTCGATCCTACACTAATGATTATCTTCCAAAGTCTGTTAGGAATAACATGCCATGTGCAAGGTCAGCATCTTCAGAGGATGAAGGCATGAATTCTTCAGGTTGCACGGAAGCTTCTAGCATCCATAACTTACAATCGGTTGGCTTGAAGGTATCAAATCATGTAATGAACAACCCTATCAGTCCCTTGAAGTCTGCTGGAATTAACTCTTCATCATATGCATTTGCCGATACAAAGTTAGCTTCTAGAAGTAAAGAACTGTCACATTATAGTACAAAATGTGGGGATAATGGCAATCAATCTGGCAGTTGTACTTCAACTCAGGTTGCAAGCTGTTCTCCAAATTCTAAGAATGGTTTAAAAACGTCTGTACCGAAAGTTGATCAGTTTAGAGGATCAAATTTGTCAAATCACTTTCCACAAGTGGTAGGCAGTGATATTAGTAGAGTGTACAGTGACAAGGGTCTTTTTCCATATGATTTGTTTGTCAAGCTTTATACCTTGAACAGAGTGGAGTTGCAACCTTTTGGTCTTCTAAATTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTAGCCTTTACACCACCCCTGACTGCTTATTTGCTTCAAGGACTTCATTCTAAATCATGTATAAACAAGAAATGGTGTTTCATCTGTGAGTTTGAAAAAATGATTTTGAAGTCAAAATACACGGAAGCTCCTCTGTCTCCTATGGGCATACTGTCTCAACTGCAGAATATTGGGTGTCAACTTGGTAATGGTAGAGAAGAAGATGCACATGAATTTCTAAGGCTTACTGTCGAGACAATGCAATCTGTTTGCCTTATGGGAGCTGAGGTTAATTTATCAGACTCACTAAAAGAGGAAACTAATTTAATGGGTCTAACATTTGGAGGCTATCTTCGATCAAAGGTACAATGCATTAAATGTGGAGGGAAATCTGAGCATCAGGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGAGGTAGCAACCCTGGAGGAGGCTCTTCGAAGATTTACAAGCACTGAGACTCTGGATGGAGAAAACAAATACCACTGTATCAGGTGTAAATCTTATGAGAAGGCCAAGAAAAAATTGACAGTTTCAGAGGCACCTAATGTTCTTACAATTGCATTGAAGAGATTTCAGTCCGGAAAATTTGGGAAGCTCAATAAACCTATCCGGTTTCCTGAAATACTTGACTTGGCACCTTTCATGAGTGGGATCAGTGATAGCTCACCTATATACAAGCTTTATGGGGTAGTTGTTCACTTGGATACTATGAATATTGCCTTCTCGGGTCACTATGTTTGCTATGTCAAGAATTTCCAAAACAAATGGTTCAAGATTGATGACAGTGTGGTAAAAGCTGTTGAATTGGAAAGAGTCTTGACAAAAGGGGCATACATACTTCTTTATGCAAGGTGCTCACCAAAGGCCCCAAGATTAATCAGGAACAAGATAGTATCCTCAGATTCAAAAGCCAAAGTTTATGGAAAGACTGTTACAATGAAAGCAAGACATGTGTCTATAGATTCTGGTGCTGCCGAATGCATGACTAGTTCGATTTCTTTAGATGGTTCACCCACCTTCAAGACCCATCATTCAAAGTTTCACCACATGAAAAGGATTTTGGATGAAGACTCATGTAGTGATAATTCATCCCTCATCAGCAACAATTCTGATGAAGGTTCTTGCAGTACTGATAGCACTCGTGATTCAAGCAGTACTGAGGACTTTGGCGATTATATTTTCGGTGATTCGGGACCATCAGTTTTCTCACATACAACTGGGTTGCCACCACCTCCTACAGGTACAGGTTCATGGGGATGTGTTTCGCATATACATCCTGACACAAGTATACACCGTAGGAAGTTAGATGCAAGTAGAGATAGCAGTAGTTTTAGGGAGACTGACCTTATTCAGAGAGTAGGTTCTAACCATTTTAATGTTATAAACTGTGGTGTATCATGTAGAAAATCAAGGGAAAGAACGGATTCAAAATTTATTGGGCACCATGTGTAA 3006 0.4145 MRVTVDLGFSILVLTCLVCVVVLVIGFVVRRKWMRAVARTEEVKRLLDFAKEEAARVENEASYRYVAVLVAKNNQCAVCFCPTTTRCARCKAVHYCSGKCQILHWRKGHKEECHPPNTASETDDLIGDIGKKVTEQGYRGVHNDMVQVESTEYKTSYKKLPSSDNIRVESNTKNVIDSNSELSSNSFSGFSASNSSGESSDDSSVCDSMTSNEHGRSEGHVFADPSPVISDTISNDDSKGRVIPLSPKFASLVDSVKGFSTKNKLNQVRPVFGKEESKLTFNGSYGLSMRKTVTIEPSSVSSGFWDKTHAPRGTKDDASSDSLRSYTNDYLPKSVRNNMPCARSASSEDEGMNSSGCTEASSIHNLQSVGLKVSNHVMNNPISPLKSAGINSSSYAFADTKLASRSKELSHYSTKCGDNGNQSGSCTSTQVASCSPNSKNGLKTSVPKVDQFRGSNLSNHFPQVVGSDISRVYSDKGLFPYDLFVKLYTLNRVELQPFGLLNCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCINKKWCFICEFEKMILKSKYTEAPLSPMGILSQLQNIGCQLGNGREEDAHEFLRLTVETMQSVCLMGAEVNLSDSLKEETNLMGLTFGGYLRSKVQCIKCGGKSEHQERMMDLTVEIEGEVATLEEALRRFTSTETLDGENKYHCIRCKSYEKAKKKLTVSEAPNVLTIALKRFQSGKFGKLNKPIRFPEILDLAPFMSGISDSSPIYKLYGVVVHLDTMNIAFSGHYVCYVKNFQNKWFKIDDSVVKAVELERVLTKGAYILLYARCSPKAPRLIRNKIVSSDSKAKVYGKTVTMKARHVSIDSGAAECMTSSISLDGSPTFKTHHSKFHHMKRILDEDSCSDNSSLISNNSDEGSCSTDSTRDSSSTEDFGDYIFGDSGPSVFSHTTGLPPPPTGTGSWGCVSHIHPDTSIHRRKLDASRDSSSFRETDLIQRVGSNHFNVINCGVSCRKSRERTDSKFIGHHV 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0418 1001 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 498 803 IPR028889 -
Lal22g0418 1001 SUPERFAMILY Cysteine proteinases 494 806 IPR038765 -
Lal22g0418 1001 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 19 916 - -
Lal22g0418 1001 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 935 974 - -
Lal22g0418 1001 MobiDBLite consensus disorder prediction 882 902 - -
Lal22g0418 1001 MobiDBLite consensus disorder prediction 300 359 - -
Lal22g0418 1001 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Lal22g0418 1001 Coils Coil 40 60 - -
Lal22g0418 1001 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 916 - -
Lal22g0418 1001 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 935 974 - -
Lal22g0418 1001 Gene3D Cysteine proteinases 491 814 - -
Lal22g0418 1001 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 499 514 IPR018200 GO:0004843|GO:0006511
Lal22g0418 1001 MobiDBLite consensus disorder prediction 177 212 - -
Lal22g0418 1001 Pfam Ubiquitin carboxyl-terminal hydrolase 498 800 IPR001394 GO:0004843|GO:0016579
Lal22g0418 1001 MobiDBLite consensus disorder prediction 177 227 - -
Lal22g0418 1001 MobiDBLite consensus disorder prediction 320 359 - -
Lal22g0418 1001 Pfam MYND finger 76 113 IPR002893 -
Lal22g0418 1001 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Lal22g0418 1001 Gene3D - 67 118 - -
Lal22g0418 1001 SUPERFAMILY HIT/MYND zinc finger-like 71 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0418 Lal-Chr22 2706183 2711768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0418 400 955 Miscellaneous Gene Families AT4G31670 38.021 1.18e-124 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0418 K11855 - gmx:100782303 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0418 22 2706183 2711768 Lal22g0418 22 2706183 2711768 ECH
Lal18g1178 18 14673649 14679501 Lal22g0418 22 2706183 2711768 LSH
Lal22g0418 22 2706183 2711768 Lal6g0445 6 2807004 2812544 LSH