Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1178 ATGCGTGTCACCGTGGATTTAGGGTTTTGGAGTCTGGTATTTACTTCTCTGGTTTGCGTCGTTGTTTTCGTGATCAGCTTCATCGTCAGCCGTAGATGGAGGCGCTCGGTGGCGAGGGCTGAGGAGGTGAAAAGGCTTTTGAATTTGGCGAAGGAGGAGGCTGCTAGGGTTGAGAACGAAGCTTCGTATGAATACGGCGCCGTTTTGGTCGCTAAGAACAATCAATGCGCCGTGTGCTTATGCCCCACCACAACACGGTGTTCGCGGTGTAAAGCCGTTCACTACTGTTCTGGTAAGTGCCAAATCCTTCATTGGCGTCGTGGTCACAAAGAAGAATGCCATCCTCCCAGCACAACTAGCAAAACTGATGATTTGACAAGTGATCTTAGCAAGAAGGTAGCTGAGAGTGGAGTTGGTGATGAGAAGTTTCAGGTGAAGAGCACAGAGTATAAAGCCTACTCTAAGAAACTCCCATCATTTGATAACATAAGTTTTGAGTCGAATGGAAAAAATGTTGCAGACACTGATTCAGAAGTATCAAGTAACTCATTTTCTGGATTCTCAGCTTCCAATAGTACCAGTGAATTTATGTCTCATGATTCCCCTGTCCGTGAGAGTGTGACCTTGAATGAGCATGAGAGATCAGAGGGACATGTTTTTACTGCTCCGACCCTTGTCATTTCTGATACCACTTCAAATGATGATAGCAAGGGTGTAGCCATTCCATTGTCACCTAAGTTTGGTAGTTTAGTTGATATAGTGGATGGGTTTTCTACAAAGGATAAATTAAACCAGGTTAGATCTGGTTTTGCTAAAGAAGAGAGTAAGCTCACATCAAATGGTAGTTCTGGTTTGAATTTGCGGAAGAGGGCTACAATTCAGCCTTCTATGGTGTCTTCTGAATTCTCGGACAAAATTCATTCTCCGAGAGGGATAAAAGATAATGCCAGTAGTGATCCTATTCGGCCGCACTTTAACAATTCGCTTCCAAACTCAGTTCGGGATAACATGCTACGTACAAGATCGGCATCTTCAGAGAATGAAAGCATGGACTATTCAGGTTATGCAGAAGCTTCGAGCATCCGTAATTTGCAATCTGTTGGCTCGAAGGTATCAAATCATGTAATGAACAACCCCGTCAGCACCTTAAAGTCGGCTGAAATTAAATCTCCACCACGTGCATTTGCCGATACAAAATTAGCTTGTATAACTAAAGAGCTGTCACATTATGGTACAAAACATGGGGATAATGACAATCAATCTGGCACTTCTACTTCAACTCAGGTTGCTAACTCTTCTCCAAATTCTAAGAATGGCCCAAAATCATCTGTACTGAAAGTTGTTGATCACTTTAGAGGATCAAATCTGTCAAAACACTTTCCACAAGCTGTTGACAGTGATATTGGTGGAAGATACGGTGGCAAGGGTCTTTTTCCGTATGATTTGTTTATCAAGCTTTATACTTGGAACAGAGTGGAGTTGCAACCATTTGGTCTTATAAATTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTAACATTTACACCACCTCTGACTGCCTATTTGCTTCAAGGACTTCATTCTAAATCATGTGAAAACAAGAAATGGTGTTTCATCTGTGAGTTTGAAAATTTGATTTTGAAGTCAAAAGACACAGAAGCCCCCCTCTCTCCTATGAGCATACTCTCTCAGCTACAGAATATTGGGAGTCAACTTTGTAGTGGTAGAGAAGAAGATGCACATGAATTTCTAAGGTTTGCTGTTGAAACAATGCAATCTATTTGCCTTATGGAAGCTGCGGCTAATGCATCAGACTCATTGAAAGAGGAAACTAATTTAATGGGTCTAACATTTGGAGGCTATCTTCGATCAAAGATACAGTGCATTAAATGTGGAAGCAAATCTGAGCGCCATGAAAGGATAATGGATATGACTGTTGAGATAGAAGGGGAGGTAACAACCCTGGAGGAGGCCCTTCGAAGATTTACAAGCACCGAGACGCTGGATGGAGAAAACAAGTACCACTGTACCAGAATCTCTGAATCTGTCAAATCTATGGCACATAGTTCTGTTGGTCAAAATAATTTATGCGTTCTTGTTTTTTCTCCGAATTCCTTTTCTTTTTGGTGCAAATCTTATGAGAAGGCCAAGAAAAAATTGACAGTTTCAGAGGCACCTAATGTTCTTACAATTGCATTGAAGAGATTTCAGTCTGGAAAATTTGGGAAACTCAATAAATCTATTCGGTTTCCTGAAATACTTGACTTGGCACCTTTCATGAGTGGAACCAGTGATAGATCACCTATATACAGGCTTTATGGGGTAGTTGTTCACTTGGATTCTATGAATGCTGCTTTTACGGGTCACTATGTTTGCTATGTAAGGAATTTTCAAAACAAGTGGTTCAAGGTTGATGACAGCACGGTAAAAGCCGTTGGATTGGAAAGAGTCTTGAGAAAAGAAGCATACATGCTTCTTTATGCAAGGTGCTCACCAAGGGCCCCAAGAGTAATCAGGAACATGATAGTATCCTCGAATTCAAAAGGCAAAGTTAGTGGAAAGACTGTTACAATGAAAACAAAACATGTATCCACAGATTCTGGTGCTGCTGAATGCATGACTAGTTCAATTTCCCCTAATGGTTCACCCACCTTTGAGACTTTCCACCATTCAAAGTTTCATCACATGAAAAGGATTCTGGAGGAAGACTCATGTAGTGATAATGCATCCCTCATCAGCAACAATTCTGATGATGGTTCTTGCAGTACTGATAGCACTCGCGATTCAAGCAGTACCGATGACTTTGGCGATTATATTTTTCGTGATTCAGGGCCATCAACTTTCTCACATGCAACTGGGTTGCCACCACCTCCAACAGATTCAAGGGGAAGTGTTTCTCATTTGCATCCTGATACAACTATACATCATAGGAAGTTAGATACTAGTAGGGATAGTATTAGTTTTAGGAGACCAACTCTTTTCAGAGAATAG 3000 0.4137 MRVTVDLGFWSLVFTSLVCVVVFVISFIVSRRWRRSVARAEEVKRLLNLAKEEAARVENEASYEYGAVLVAKNNQCAVCLCPTTTRCSRCKAVHYCSGKCQILHWRRGHKEECHPPSTTSKTDDLTSDLSKKVAESGVGDEKFQVKSTEYKAYSKKLPSFDNISFESNGKNVADTDSEVSSNSFSGFSASNSTSEFMSHDSPVRESVTLNEHERSEGHVFTAPTLVISDTTSNDDSKGVAIPLSPKFGSLVDIVDGFSTKDKLNQVRSGFAKEESKLTSNGSSGLNLRKRATIQPSMVSSEFSDKIHSPRGIKDNASSDPIRPHFNNSLPNSVRDNMLRTRSASSENESMDYSGYAEASSIRNLQSVGSKVSNHVMNNPVSTLKSAEIKSPPRAFADTKLACITKELSHYGTKHGDNDNQSGTSTSTQVANSSPNSKNGPKSSVLKVVDHFRGSNLSKHFPQAVDSDIGGRYGGKGLFPYDLFIKLYTWNRVELQPFGLINCGNSCYANAVLQCLTFTPPLTAYLLQGLHSKSCENKKWCFICEFENLILKSKDTEAPLSPMSILSQLQNIGSQLCSGREEDAHEFLRFAVETMQSICLMEAAANASDSLKEETNLMGLTFGGYLRSKIQCIKCGSKSERHERIMDMTVEIEGEVTTLEEALRRFTSTETLDGENKYHCTRISESVKSMAHSSVGQNNLCVLVFSPNSFSFWCKSYEKAKKKLTVSEAPNVLTIALKRFQSGKFGKLNKSIRFPEILDLAPFMSGTSDRSPIYRLYGVVVHLDSMNAAFTGHYVCYVRNFQNKWFKVDDSTVKAVGLERVLRKEAYMLLYARCSPRAPRVIRNMIVSSNSKGKVSGKTVTMKTKHVSTDSGAAECMTSSISPNGSPTFETFHHSKFHHMKRILEEDSCSDNASLISNNSDDGSCSTDSTRDSSSTDDFGDYIFRDSGPSTFSHATGLPPPPTDSRGSVSHLHPDTTIHHRKLDTSRDSISFRRPTLFRE 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1178 999 MobiDBLite consensus disorder prediction 914 985 - -
Lal18g1178 999 MobiDBLite consensus disorder prediction 414 442 - -
Lal18g1178 999 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 713 947 - -
Lal18g1178 999 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21 689 - -
Lal18g1178 999 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 964 993 - -
Lal18g1178 999 MobiDBLite consensus disorder prediction 411 443 - -
Lal18g1178 999 Coils Coil 40 60 - -
Lal18g1178 999 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 21 689 - -
Lal18g1178 999 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 713 947 - -
Lal18g1178 999 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 964 993 - -
Lal18g1178 999 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 497 833 IPR028889 -
Lal18g1178 999 MobiDBLite consensus disorder prediction 914 932 - -
Lal18g1178 999 MobiDBLite consensus disorder prediction 296 333 - -
Lal18g1178 999 Pfam MYND finger 76 113 IPR002893 -
Lal18g1178 999 Gene3D - 67 117 - -
Lal18g1178 999 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 498 513 IPR018200 GO:0004843|GO:0006511
Lal18g1178 999 Gene3D Cysteine proteinases 490 843 - -
Lal18g1178 999 SUPERFAMILY Cysteine proteinases 493 836 IPR038765 -
Lal18g1178 999 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Lal18g1178 999 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Lal18g1178 999 SUPERFAMILY HIT/MYND zinc finger-like 72 115 - -
Lal18g1178 999 Pfam Ubiquitin carboxyl-terminal hydrolase 497 830 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1178 Lal-Chr18 14673649 14679501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1178 408 837 Miscellaneous Gene Families AT4G31670 41.591 5.35e-116 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1178 K11855 - gmx:100782303 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1178 18 14673649 14679501 Lal18g1178 18 14673649 14679501 ECH
Lal18g1178 18 14673649 14679501 Lal22g0418 22 2706183 2711768 LSH
Lal18g1178 18 14673649 14679501 Lal6g0445 6 2807004 2812544 LSH