Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0262 ATGTTCCTATTTCCTCTTCTTACACATTGTTGGCCTTGGAATGTCCCTAATCTTCTCTCTCACTCCTCTTCACATATTCCTTCTCTTAAATCTTCAATTCAACCCATCATCTTTGATCTTTCTGGTATTGCTGTAGCCTGTAGGATTTACCAAAGCAGCATGTCATACAAAGTGGACCATGAATACAACTATCTCTTTAAGGTTGTCTTGATTGGGGATTCTGGGGTTGGAAAGACCAATATCCTATCCAGGTTCACAAGAAACGAGTTCTACTTGGACTCTAAGTCTACCATTGGGGTTGAATTTGCAACCAGAACATTACAGGTGGAAGGGAAAACTGTAAAGGCACAAATATGGGATACTGCAGGGCAAGAGAGGTACAGAGCTATAACTAGTGCCTACTACAGAGGAGCTGTTGGTGCATTATTGGTGTATGACATAACCAAGAGGCAAACATTTGACAATGTACAAAGATGGCTTCGTGAACTAAGGGATCATGCAGATTCCAACATTGTTATAATGATGGCTGGAAACAAATCTGACTTGAATCATCTGAGAGCAGTGTCCACTGAAGATGCTAAATGTTTGGCTGAGAAAGAAGCTTTGTCCTTTCTAGAGACTTCAGCATTGGAGGCCTACAATGTTGAGAAGGCTTTCCAAACCATTTTGTTTGATATATATCATATTATAAGTAAAAAGGCATTGGCAGCTCAGGAAGAAACTTCTACTAGTGTTCCTCGTGGAACTACCATAAATGTCTCAAATATGTCTAGTCATTCCGGTAGTAAAACTTGTTGCTCAAATTAA 807 0.3978 MFLFPLLTHCWPWNVPNLLSHSSSHIPSLKSSIQPIIFDLSGIAVACRIYQSSMSYKVDHEYNYLFKVVLIGDSGVGKTNILSRFTRNEFYLDSKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAKCLAEKEALSFLETSALEAYNVEKAFQTILFDIYHIISKKALAAQEETSTSVPRGTTINVSNMSSHSGSKTCCSN 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0262 268 ProSiteProfiles small GTPase Rho family profile. 59 227 - -
Lal6g0262 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 236 IPR027417 -
Lal6g0262 268 SMART rho_sub_3 68 225 IPR001806 GO:0003924|GO:0005525
Lal6g0262 268 Gene3D - 58 266 IPR027417 -
Lal6g0262 268 MobiDBLite consensus disorder prediction 244 268 - -
Lal6g0262 268 PRINTS Transforming protein P21 ras signature 66 87 - -
Lal6g0262 268 PRINTS Transforming protein P21 ras signature 89 105 - -
Lal6g0262 268 PRINTS Transforming protein P21 ras signature 107 129 - -
Lal6g0262 268 PRINTS Transforming protein P21 ras signature 169 182 - -
Lal6g0262 268 PRINTS Transforming protein P21 ras signature 204 226 - -
Lal6g0262 268 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 54 268 - -
Lal6g0262 268 SMART ras_sub_4 63 229 - -
Lal6g0262 268 CDD Rab11_like 64 227 - -
Lal6g0262 268 SMART rab_sub_5 66 229 - -
Lal6g0262 268 Pfam Ras family 67 226 IPR001806 GO:0003924|GO:0005525
Lal6g0262 268 ProSiteProfiles small GTPase Rab1 family profile. 61 266 - -
Lal6g0262 268 PANTHER - 54 268 - -
Lal6g0262 268 SMART ran_sub_2 71 266 - -
Lal6g0262 268 ProSiteProfiles small GTPase Ras family profile. 60 252 IPR001806 GO:0003924|GO:0005525
Lal6g0262 268 TIGRFAM small_GTP: small GTP-binding protein domain 65 222 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0262 Lal-Chr6 1706685 1708450 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0262 K07904 - gmx:100799595 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0262 6 1706685 1708450 Lal18g1346 18 15897176 15898030 ECH
Lal6g0262 6 1706685 1708450 Lal6g0262 6 1706685 1708450 ECH
Lal18g1346 18 15897176 15898030 Lal6g0262 6 1706685 1708450 LSH
Lal3g0560 3 4230851 4233347 Lal6g0262 6 1706685 1708450 PCT
Lal5g1154 5 14278350 14280594 Lal6g0262 6 1706685 1708450 PCT
Lal18g1346 18 15897176 15898030 Lal6g0262 6 1706685 1708450 PCT
Lal6g0262 6 1706685 1708450 Lal3g0560 3 4230851 4233347 PCT
Lal6g0262 6 1706685 1708450 Lal5g1154 5 14278350 14280594 PCT
Lal6g0262 6 1706685 1708450 Lal18g1346 18 15897176 15898030 PCT