Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1154 ATGGCATATAAAGTGGATCATGAATACGACTATCTCTTCAAGATTGTGCTGATTGGAGACTCTGGTGTTGGAAAATCCAATATTCTCTCCAGATTTACACGAAATGAGTTCTGTTTGGAGTCTAAGTCTACCATTGGGGTTGAATTTGCAACCAGAACGTTACAGGTGGAGGGGAAAACAGTGAAGGCTCAAATATGGGACACTGCAGGTCAAGAGAGGTATAGAGCCATAACAAGTGCATACTATAGAGGTGCTGTTGGTGCATTATTAGTGTATGATATAACTAAGAGACAAACATTTGACAATGTACAAAGATGGCTTCGTGAACTAAGGGACCATGCAGACTCTAACATTGTTATTATGATGGCTGGTAACAAATCTGACCTGAATCATTTAAGAGCAGTGTCTCTTGAAGATGCTCAAAGTTTGGCTGAGAAAGAAGGGCTTTTATTCCTTGAAACTTCAGCATTGGAAGCCTTTAATGTTGAGAAGGCATTTCAAACCATTTTGTTTGATATTTATCACATCATAAGTAAAAAAGCTTTGGCTGCACAAGATGCTGCTGGAACTACTACCCTTCCTCAAGGGACAACTATAAATGTCTCAAATATGTCAAGTAATGTGGGAGATCAGAAAACTTGTTGCTCCAATTAA 654 0.3884 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSLEDAQSLAEKEGLLFLETSALEAFNVEKAFQTILFDIYHIISKKALAAQDAAGTTTLPQGTTINVSNMSSNVGDQKTCCSN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1154 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Lal5g1154 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Lal5g1154 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Lal5g1154 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Lal5g1154 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Lal5g1154 217 SMART ras_sub_4 10 176 - -
Lal5g1154 217 MobiDBLite consensus disorder prediction 195 217 - -
Lal5g1154 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Lal5g1154 217 SMART arf_sub_2 1 185 - -
Lal5g1154 217 ProSiteProfiles small GTPase Ras family profile. 1 217 IPR001806 GO:0003924|GO:0005525
Lal5g1154 217 SMART rab_sub_5 13 176 - -
Lal5g1154 217 Gene3D - 5 215 IPR027417 -
Lal5g1154 217 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Lal5g1154 217 Pfam Ras family 14 173 IPR001806 GO:0003924|GO:0005525
Lal5g1154 217 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Lal5g1154 217 CDD Rab11_like 10 174 - -
Lal5g1154 217 SMART ran_sub_2 18 213 - -
Lal5g1154 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Lal5g1154 217 PANTHER - 1 216 - -
Lal5g1154 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Lal5g1154 217 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1154 Lal-Chr5 14278350 14280594 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1154 K07904 - gmx:100799595 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1154 5 14278350 14280594 Lal5g1154 5 14278350 14280594 ECH
Lal3g0560 3 4230851 4233347 Lal5g1154 5 14278350 14280594 LSH
Lal5g1154 5 14278350 14280594 Lal18g1346 18 15897176 15898030 LSH
Lal5g1154 5 14278350 14280594 Lal18g1346 18 15897176 15898030 PCT
Lal5g1154 5 14278350 14280594 Lal6g0262 6 1706685 1708450 PCT
Lal18g1346 18 15897176 15898030 Lal5g1154 5 14278350 14280594 PCT
Lal6g0262 6 1706685 1708450 Lal5g1154 5 14278350 14280594 PCT