Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0560 ACACAGGTTTGGGGTGGTGTTGGTGTTAAAAAGATGGCATATAAAGTGGATCATGAATACGATTATCTTTTCAAAATCGTACTCATTGGAGACTCTGGTGTTGGAAAATCCAATATCCTCTCCAGGTTTACCCGAAACGAGTTCTGCTTGGAGTCCAAGTCTACCATTGGTGTTGAATTTGCAACAAGGACTTTACAGGTAGAGGGTAAGACAGTGAAAGCACAAATATGGGACACTGCAGGTCAAGAAAGATATAGAGCCATCACAAGTGCATATTATAGAGGAGCTGTTGGTGCCTTATTAGTGTATGACATAACAAAGAGACAAACATTTGACAATGTTCAAAGGTGGCTTCGTGAACTAAGAGACCATGCAGACTCTAACATTGTTATTATGATGGCTGGAAATAAATCTGACCTAAATCATTTAAGAGCAGTGTCTCTTGAAGATGCTCAAACTTTGGCTGAAAATGAAGAACTTTCATTCCTAGAAACTTCAGCATTAGAAGCCTTTAATGTTGAGAAAGCATTTCAAACCATTTTGAATGATATATATCACATTATTAGTAAAAAGGCTTTGGCAACACAAGAGGCAAATGGAACTAGTAGCAATATTCCTCATGGGACTACAATAAATGTCTCAAATATGTCAAGTAATAATGTGGGAAATCAGAAAAGTTGTTGCTCCAATTAA 693 0.3723 TQVWGGVGVKKMAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSLEDAQTLAENEELSFLETSALEAFNVEKAFQTILNDIYHIISKKALATQEANGTSSNIPHGTTINVSNMSSNNVGNQKSCCSN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0560 230 PANTHER - 12 230 - -
Lal3g0560 230 CDD Rab11_like 21 185 - -
Lal3g0560 230 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 12 230 - -
Lal3g0560 230 ProSiteProfiles small GTPase Rho family profile. 17 198 - -
Lal3g0560 230 MobiDBLite consensus disorder prediction 199 230 - -
Lal3g0560 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 190 IPR027417 -
Lal3g0560 230 SMART ras_sub_4 21 187 - -
Lal3g0560 230 SMART rab_sub_5 24 187 - -
Lal3g0560 230 Pfam Ras family 25 185 IPR001806 GO:0003924|GO:0005525
Lal3g0560 230 ProSiteProfiles small GTPase Ras family profile. 10 230 IPR001806 GO:0003924|GO:0005525
Lal3g0560 230 SMART ran_sub_2 29 228 - -
Lal3g0560 230 ProSiteProfiles small GTPase Rab1 family profile. 19 228 - -
Lal3g0560 230 Gene3D - 16 228 IPR027417 -
Lal3g0560 230 SMART rho_sub_3 26 183 IPR001806 GO:0003924|GO:0005525
Lal3g0560 230 TIGRFAM small_GTP: small GTP-binding protein domain 22 181 IPR005225 GO:0005525
Lal3g0560 230 PRINTS Transforming protein P21 ras signature 24 45 - -
Lal3g0560 230 PRINTS Transforming protein P21 ras signature 47 63 - -
Lal3g0560 230 PRINTS Transforming protein P21 ras signature 65 87 - -
Lal3g0560 230 PRINTS Transforming protein P21 ras signature 127 140 - -
Lal3g0560 230 PRINTS Transforming protein P21 ras signature 162 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0560 Lal-Chr3 4230851 4233347 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0560 K07904 - gmx:100799595 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0560 3 4230851 4233347 Lal3g0560 3 4230851 4233347 ECH
Lal3g0560 3 4230851 4233347 Lal5g1154 5 14278350 14280594 LSH
Lal3g0560 3 4230851 4233347 Lal18g1346 18 15897176 15898030 LSH
Lal3g0560 3 4230851 4233347 Lal18g1346 18 15897176 15898030 PCT
Lal3g0560 3 4230851 4233347 Lal6g0262 6 1706685 1708450 PCT
Lal18g1346 18 15897176 15898030 Lal3g0560 3 4230851 4233347 PCT
Lal6g0262 6 1706685 1708450 Lal3g0560 3 4230851 4233347 PCT