Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0251 ATGGCGATGGAGGATCGAAACACGAACAACAGGATGGTTACGAGGTTGTCGGACGTGGTTCTAGACTGTGTTATGCCTTACATCCATGACCCAAAGGACCGTGACGCTATATCTCAGGTGTGTCGCCGATGGTACGAGCTGGACTCACTCACGAGGAAGCACGTGACGATAGCGCTCTGCTACACAACCACGCCGGAACGTCTCCGGCGGCGGTTCCCACACCTGGAGTCGTTGAAGCTGAAAGGGAAGCCGAGGGCGGCGATGTTCAACTTGATACCGGAGAATTGGGGAGGGTTCGTTACCCCTTGGGTTAAGGAGATTGCACGTTACTTTGATTGCTTGAAGTCACTCCACTTTCGCCGCATGATTGTCACTGATTCCGATCTTCAGAACCTTGCACGCTCACGTGGTCACGTGCTTCAAGCTCTCAAGCTTGATAAGTGTTCTGGTTTCTCCACCGATGGTCTTTACTATATTGGTCATTTTTGCAGGAATTTAAGAATCTTATTTTTGGAAGAAAGCAGTATCACAGAGAATGATGGTGACTGGCTCCATGAGATTGCTATGAATAATACAGTTCTTGAGACACTGAATTTTTACTTGACAGATTTTTCCAAAGTCAGAAATCAGGATCTTGAACTTATAGCCAAAAATTGCCCCAACTTAGTCTCAGTGAAAATTACTGATTGTGAAATCTTGGGTCTTGTGAACTTTTTTCGACATGCATCTGCTCTAGAAGAATTTTGTGGAGGTTCCTACAATGAGGAACCAGAAAAGTACTCTGCTATTTCGTTACCAGCAAAGTTAAGTCGATTGGGTTTGACATATATTGGAAAGAATGAAATGCCAATAGTGTTTCCTTATGCAGGCATACTAAAAAAACTAGATCTTCTATATGCAATGCTGGATACAGAGGACCATTGTAACTTAATCCAAAGGTGCCCCAACTTGGAAGTCCTTGAGACAAGGAATGTAATCGGAGACAGAGGATTAGAAGTACTTGCACACAATTGTAAGAGGCTAAAAAGGCTTAGGATTGAAAGAGGTGACGATGATCAAGGAATGGCAGAAGAGGAAGGTGTTGTGTCTCAGAGAGGATTAATTGCTTTATCACAGGGCTGTCCTGAACTTGAATATATGGCTATTTATGTATCTGACATTACAAATGCATGTCTAGAACACATTGGCACTCACTTAAAAAACCTCTGTGACTTTCGCTTTGTCTTGCTAGACCGCGAAGAGAAGATAACCGATTTGCCACTTGACAATGGAGTGAGGGCTTTGCTGAGGGGTTGTGAGAAGCTTAGAAGATTTGCTTTGTATCTCAGACCTGGGGGCTTGACTGATGTAGGACTTGGTTACATAGGGCAATACAGCCCAAATGTGAGATGGATGCTACTTGGTTATATAGGGGAATCTGATGCAGGACTTTTGGAGTTCTCTAAGGGCTGCCCTAGTCTTCAGAAACTTGAAATGAGGGGCTGCTCCTTTTTTAGTGAGTATGCATTAGCTGTTGCTGCAACAAGGCTAACATCTCTGAGGTACTTATGGGTGCAAGGATATGGAGCATCTCCATCAAGCCTAGATCTTTTGGCTATGGCTCGCCCGTATTGGAACATCGAGATTATTCCTTCTAGACGCGTGCTTGCTAATAATGATCCTCAAGACCCTATAATTGTTGACCATCCAGCTCATATTCTTGCATATTACTCCCTTGCTGGCCAAAGAACAGATTTTCCAGACACAGTTAAACTTTGGGATCCACCAACATATGTTCACACCTAA 1785 0.4392 MAMEDRNTNNRMVTRLSDVVLDCVMPYIHDPKDRDAISQVCRRWYELDSLTRKHVTIALCYTTTPERLRRRFPHLESLKLKGKPRAAMFNLIPENWGGFVTPWVKEIARYFDCLKSLHFRRMIVTDSDLQNLARSRGHVLQALKLDKCSGFSTDGLYYIGHFCRNLRILFLEESSITENDGDWLHEIAMNNTVLETLNFYLTDFSKVRNQDLELIAKNCPNLVSVKITDCEILGLVNFFRHASALEEFCGGSYNEEPEKYSAISLPAKLSRLGLTYIGKNEMPIVFPYAGILKKLDLLYAMLDTEDHCNLIQRCPNLEVLETRNVIGDRGLEVLAHNCKRLKRLRIERGDDDQGMAEEEGVVSQRGLIALSQGCPELEYMAIYVSDITNACLEHIGTHLKNLCDFRFVLLDREEKITDLPLDNGVRALLRGCEKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYIGESDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATRLTSLRYLWVQGYGASPSSLDLLAMARPYWNIEIIPSRRVLANNDPQDPIIVDHPAHILAYYSLAGQRTDFPDTVKLWDPPTYVHT 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0251 594 Pfam F-box 14 54 IPR041567 -
Lal6g0251 594 SUPERFAMILY RNI-like 91 402 - -
Lal6g0251 594 SMART LRR_CC_2 484 509 IPR006553 -
Lal6g0251 594 SMART LRR_CC_2 111 135 IPR006553 -
Lal6g0251 594 SMART LRR_CC_2 432 458 IPR006553 -
Lal6g0251 594 SMART LRR_CC_2 137 162 IPR006553 -
Lal6g0251 594 Gene3D Ribonuclease Inhibitor 53 588 IPR032675 -
Lal6g0251 594 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 13 585 - -
Lal6g0251 594 Gene3D - 2 52 - -
Lal6g0251 594 SUPERFAMILY RNI-like 324 531 - -
Lal6g0251 594 SUPERFAMILY F-box domain 9 48 IPR036047 GO:0005515
Lal6g0251 594 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 13 585 - -
Lal6g0251 594 Pfam Transport inhibitor response 1 protein domain 73 119 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0251 Lal-Chr6 1636845 1640074 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0251 K13463 - gmx:100793081 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0251 6 1636845 1640074 Lal6g0251 6 1636845 1640074 ECH
Lal22g0241 22 1504819 1509490 Lal6g0251 6 1636845 1640074 LSH
Lal3g0576 3 4355910 4359930 Lal6g0251 6 1636845 1640074 PCT
Lal6g0251 6 1636845 1640074 Lal3g0576 3 4355910 4359930 PCT