Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0241 ATGGCGATGGTGGATCGAAACATGAATAGCAGGATGAATCCGACGTTATCGGACGTGGTTCTAGACTGCGTTTTGCCGTACATCCACGACCCTAAGGACCGTGACGCGATATCTCAGGTGTGTCGTCGGTGGCACGAGCTAGACTCACACACGAGGAAGCACGTGACGATTGCTCTATGCTACACAACCACGCCGGAACGTCTCCGGCGGCGGTTCCCTCACCTGGAATCGTTGGAGCTGAAGGGGAAGCCGAGAGCGGCGATGTTCAACTTGATACCTGAGAATTGGGGAGGGTTCGTTACTCCTTGGGTTAGAGAGATTGCGCTTTACTTTGATTGTTTGAAATCCCTTCATTTTCGCCGCATGATTGTCACTGATTCAGATCTTAAGAATCTTGCACGCTCTCGTGGTCACGTGCTTCAAGCTCTTAAGCTTGATAAGTGTTCTGGTTTCTCCACCGATGGTCTTTACTATATTGGTCGTTTTTGCAGGAATTTAAGAATCTTATTTTTGGAAGAAAGCAGTATTACAGAGAATGATGGTGACTGGCTCCATGAGATTGCAGTGAATAATACAGTTCTTGAGACACTGAATTTTTACTTGACAGATTTCGCCAATGTCAGAATTCAGGACCTTGAACTTATAGCCAAAAATTGCCCCAACTTAGTCTCTGTGAAAATAACTGATTGTGAAATCTTAGGTCTTGTGAACTTCTTTCGACACGCATCTTCTCTAGAAGAATTTTGTGGAGGTTCCTACAATGAGGAACCAGAAAAGTACTCTTCTGTATCATTACCAGCAAAGCTAAGTCGTTTGGGTTTGACATACATTGGAAAGAATGAAATGCCAATAGTGTTTCCTTATGCAGCCATACTAAAAAAATTGGATCTTCTCTATGCAATGCTGGACACAGAGGATCATTGTAACTTGATACAAAGGTGCCCCAATTTGGAAGTCCTTGAGACAAGAAATGTAATAGGAGACAGAGGATTAGAAGTACTTGCACAGACTTGTAAGAGGCTAAAAAGGCTTAGGATTGAAAGAGGTGATGATGATCAAGGAATGGCAGAAGAGGAAGGTGTTGTTTCTCATAGAGGATTAATTGCTTTATCACAGGGGTGTCCACAGCTTGAATATATGGCTGTTTATGTATCAGACATTACAAATGCATGTCTAGAACACATTGGCACTCACTTGAAAAACCTCTGTGACTTTCGCTTTGTCTTGCTAGACCGCGAAGAGAGAATAACCGATTTGCCACTTGACAATGGAGTGAAGGCTTTGCTTAGGGGTTGTGAGAAGCTTAGAAGATTTGCTTTGTATCTCAGACCTGGAGGGTTGACTGATGTAGGACTTGGTTACATAGGACAATACAGCCCAAATGTGAGATGGATGCTTCTTGGTTATGTAGGGGAAACTGATGCAGGACTTTTAGAGTTCTCTAAAGGCTGCCCAAGTCTTCAGAAACTTGAAATGAGGGGGTGTTCCTTTTTTAGTGAGTATGCACTAGCTGTTGCAGCAACAAGACTAACTTCTCTTAGGTACTTATGGGTGCAAGGATATGGAGCATCTCAATCTGGTTGTGATCTTTTGGCTATGGCTCGCCCCTATTGGAACATCGAGATTATTCCTTCTAGAACTGTGGTTGCTAATGATGATCCTCAACAGCCTATATTTGTTGAGCATCCAGCTCATATTCTTGCATATTACTCCCTTGCTGGGCCAAGAACAGATTTTCCAGACACAGTTACACCTTTGGCTCCTGCAACATCTGTTCACACCTAA 1785 0.4336 MAMVDRNMNSRMNPTLSDVVLDCVLPYIHDPKDRDAISQVCRRWHELDSHTRKHVTIALCYTTTPERLRRRFPHLESLELKGKPRAAMFNLIPENWGGFVTPWVREIALYFDCLKSLHFRRMIVTDSDLKNLARSRGHVLQALKLDKCSGFSTDGLYYIGRFCRNLRILFLEESSITENDGDWLHEIAVNNTVLETLNFYLTDFANVRIQDLELIAKNCPNLVSVKITDCEILGLVNFFRHASSLEEFCGGSYNEEPEKYSSVSLPAKLSRLGLTYIGKNEMPIVFPYAAILKKLDLLYAMLDTEDHCNLIQRCPNLEVLETRNVIGDRGLEVLAQTCKRLKRLRIERGDDDQGMAEEEGVVSHRGLIALSQGCPQLEYMAVYVSDITNACLEHIGTHLKNLCDFRFVLLDREERITDLPLDNGVKALLRGCEKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATRLTSLRYLWVQGYGASQSGCDLLAMARPYWNIEIIPSRTVVANDDPQQPIFVEHPAHILAYYSLAGPRTDFPDTVTPLAPATSVHT 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0241 594 SUPERFAMILY RNI-like 366 521 - -
Lal22g0241 594 Pfam Transport inhibitor response 1 protein domain 73 119 IPR041101 -
Lal22g0241 594 Pfam F-box 15 54 IPR041567 -
Lal22g0241 594 SUPERFAMILY RNI-like 91 402 - -
Lal22g0241 594 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 13 588 - -
Lal22g0241 594 SUPERFAMILY F-box domain 14 50 IPR036047 GO:0005515
Lal22g0241 594 SMART LRR_CC_2 484 509 IPR006553 -
Lal22g0241 594 SMART LRR_CC_2 111 135 IPR006553 -
Lal22g0241 594 SMART LRR_CC_2 137 162 IPR006553 -
Lal22g0241 594 SMART LRR_CC_2 432 458 IPR006553 -
Lal22g0241 594 Gene3D Ribonuclease Inhibitor 53 589 IPR032675 -
Lal22g0241 594 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 13 588 - -
Lal22g0241 594 Gene3D - 3 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0241 Lal-Chr22 1504819 1509490 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0241 K13463 - gmx:100793081 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0241 22 1504819 1509490 Lal22g0241 22 1504819 1509490 ECH
Lal22g0241 22 1504819 1509490 Lal6g0251 6 1636845 1640074 LSH
Lal3g0576 3 4355910 4359930 Lal22g0241 22 1504819 1509490 PCT
Lal22g0241 22 1504819 1509490 Lal3g0576 3 4355910 4359930 PCT