Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0576 ATGAATTACGACGGTAACGTGACGAGAACGAACCGTGTCGTAGACTTAGTCCTCGACTGCGTTATTCCTTATATCAACGATCCTAAGGACCGCGACGCCGTTTCACAGGTATGCCAGCGGTGGTTTGAGCTTGATTCTCTAACGCGAAAACATGTTACCATCGCGCTCTGTTACACCACCACGCCGGAGCGCCTCCGCCGCCGCTTCCCTCACTTAGAGTCGCTGAAACTGAAGGGAAAGCCGAGGGCGGCGATGTTCAATTTGATACCGGAGGATTGGGGTGGTCACGTGAGTCCTTGGGTGAGAGAAATTTCACAGCGCTTTGATTGCATAAGGAGTCTTCATTTTAGACGAATGATTGTTAGGGATTCGGATCTTGAGCTTCTTGCACGGACACGTGGTCACGTGCTCCTCACTCTTAAGCTCGACAAGTGTTCCGGTTTTTCTACTCATGGACTTTCTTTCATTGGTCGCTTTTGCAGTTGCATATACCTTGATAATAAGGATTACAATAAAAACCAAACTCTTTGGGGGAGAGATCCACTTACTCCGAGAGTAAATGAAAAAAATATATTCATCATTCATTCTTGGGAAATCCAATTCAGGAATTTGAGGGTCTTGGTTTTGGAGGAAAGCTCAATTGTTGAGCATGATGGTCAATGGTTGCACGAGCTTGCTTTAAATAATACAGTTCTTGAGACATTGAATTTTTACTTGACAGATATTGCTGAAGTCATAATTCAGGACCTTGAACTTCTAGCTAAAAACTGCCCCAAGTTAGTCGCTGTGAAAATTACTGATTGTGAAATCTTAGATCTTAAGAACTTCTTCCGATATGCATCTGCTCTAGAAGAATTTTCTGGAGGTGCTTACAATGAGGAACCAGAAAGGTACTCTTCTGTGTCATTACCAGCAAAGTTATGTCGATTGGGTTTAACATATATTGGAAAGAATGAGTTGCCTATAGTGCTTGTGTATGCGGCTGTGTTAAAAAAGTTGGATCTCCTCTATGCGATGTTGGATACAGAGGACCATTGTGTGTTGATCCAAAGGTGCCCAAATTTGGAAGTCCTTGAGACAAGGAACGTGATTGGAGATAGAGGATTAGAAGTTCTAGCTCGATACTGTAGGAGGCTAAAGAGGCTTAGGATCGAACGAGGTGAGGATGATCAAGGAATGGAGGACGAAGAAGGTGTTGTTTCCCAGAGAGGATTAATTGCATTGTCACAAGGCTGTCCAGAACTTGAATATTTGGCTGTTTATGTATCTGATATTACAAATGCAGCTTTGGAACAGATTGGTACACACTTAAGATACCTTGATGATTTTCGCCTTGTCTTGCTGGATCATGTAGAGGAAATAAGTGATTTGCCACTTGACAATGGAGTGAGGGCTTTACTGACGGGCTGTGACAAGCTTGAAAGATTTGCTCTATATCTCCGGCCTGGTGGTTTGACCGATATTGGTCTTGGTTACATCGGAAAATACAGCCAACACGTGAGATGGATGCTGCTTGGTTTCGTAGGGGAATCGGATGCAGGGCTTTTGGAGATGTCTAAGGGCTGTCCTAATCTTCAGAAACTTGAAATTAGAGGGTGTTCCTTTTTTAGCGAGCGCGCACTAGCTGTTGCTGTCACTCAACTCACTTCTCTTAGGTACTTATGGGTGCAAGGGTATGGTGTATCTCAATCTGCTGGACGTGATCTTTTGGCAATGGCTCGCCCCTTTTGGAATATCGAGTTGATTCCTTCTAGGTATGTGCCCGTCATTCATTATCCGGATCAACCGGCAATTGTTGAGCCTGTAACTGTTGAGCATCCAGCTCATATTCTTGCATATTACTCTCTGGTTGGGCAAAGATCAGATTTTCCAGCTAGTGTTATACCTTTGGACCCTACCACATATGTGGATGTGTAG 1917 0.4392 MNYDGNVTRTNRVVDLVLDCVIPYINDPKDRDAVSQVCQRWFELDSLTRKHVTIALCYTTTPERLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVSPWVREISQRFDCIRSLHFRRMIVRDSDLELLARTRGHVLLTLKLDKCSGFSTHGLSFIGRFCSCIYLDNKDYNKNQTLWGRDPLTPRVNEKNIFIIHSWEIQFRNLRVLVLEESSIVEHDGQWLHELALNNTVLETLNFYLTDIAEVIIQDLELLAKNCPKLVAVKITDCEILDLKNFFRYASALEEFSGGAYNEEPERYSSVSLPAKLCRLGLTYIGKNELPIVLVYAAVLKKLDLLYAMLDTEDHCVLIQRCPNLEVLETRNVIGDRGLEVLARYCRRLKRLRIERGEDDQGMEDEEGVVSQRGLIALSQGCPELEYLAVYVSDITNAALEQIGTHLRYLDDFRLVLLDHVEEISDLPLDNGVRALLTGCDKLERFALYLRPGGLTDIGLGYIGKYSQHVRWMLLGFVGESDAGLLEMSKGCPNLQKLEIRGCSFFSERALAVAVTQLTSLRYLWVQGYGVSQSAGRDLLAMARPFWNIELIPSRYVPVIHYPDQPAIVEPVTVEHPAHILAYYSLVGQRSDFPASVIPLDPTTYVDV 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0576 638 Gene3D Ribonuclease Inhibitor 50 634 IPR032675 -
Lal3g0576 638 Pfam F-box 12 51 IPR041567 -
Lal3g0576 638 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 211 633 - -
Lal3g0576 638 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 11 169 - -
Lal3g0576 638 SUPERFAMILY RNI-like 312 568 - -
Lal3g0576 638 Pfam Transport inhibitor response 1 protein domain 70 116 IPR041101 -
Lal3g0576 638 Gene3D - 3 49 - -
Lal3g0576 638 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 11 169 - -
Lal3g0576 638 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 211 633 - -
Lal3g0576 638 SMART LRR_CC_2 522 548 IPR006553 -
Lal3g0576 638 SMART LRR_CC_2 412 436 IPR006553 -
Lal3g0576 638 SMART LRR_CC_2 470 496 IPR006553 -
Lal3g0576 638 SUPERFAMILY RNI-like 105 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0576 Lal-Chr3 4355910 4359930 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0576 K13463 - gmx:100779171 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0576 3 4355910 4359930 Lal3g0576 3 4355910 4359930 ECH
Lal3g0576 3 4355910 4359930 Lal22g0241 22 1504819 1509490 PCT
Lal3g0576 3 4355910 4359930 Lal6g0251 6 1636845 1640074 PCT
Lal22g0241 22 1504819 1509490 Lal3g0576 3 4355910 4359930 PCT
Lal6g0251 6 1636845 1640074 Lal3g0576 3 4355910 4359930 PCT