Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal6g0234 | ATGGCGGCTGCGAACGCTCCGATCTCCATGAAAGAAGCCCTAACCTTGCCGAGTATTGGCATCAATCCACAATTCATCACTTTCACGCATGTGACGATGGAATCGGATAAGTATATCTGTGTTCGGGAAACGGCTCCGCAAAATAGTGTGGTTATCATTGATATGACTGTGCCAAATCAGCCCTTGAGGAGGCCTATCACCGCTGATTCTGCTCTTATGAATCCGAATTCTAGAATCCTTGCTTTGAAAGGTAGGAAGTACACGATCACATCTAACTGTCCATGGTATATCTACTCCATGCATGATATTGCATCTTTGTTGAGCAAGACTCCGACCAGTGCTGTTTTTCTGGTTTTCTGCCCGCCGATTACTTCCGATGCCCTTATGACCAGGTATGACCGTATGAGACTCAAGTCCCTCATTGGTGGCAGAGTTAATATGGCCTTGAGCTCTTCCACCACAATGGCTATCTGGCTAGCTGTTGGGCTACACTATTTTCTTGAAGCCCAACTCCAAGGGACAACTCAGGATCACCTACAAATATTTAATATTGAGCTTAAAGCAAAGATAAAGTCATATCAGATGTCTGAGCAGGTAGTCTTCTGGAAGTGGATTAGCCCCAAGATATTAGGTCTTGTAACACAGGCCTCTGTATACCACTGGTCGATTGAAGGTGACTCTGAACCTGTGAAGATGTTTGATAGAACTGCAAATTTGGCGAACAACCAAATAATTAATTATCGATGTGACCCGACAGAAAAATGGTTGGTCTTGATTGGCATTGCTCCTGGTTCTCCTGAGAGGCCACAATTGGTTAAAGGAAGCATGCAACTTTTCTCTGTGGATCAGCAGCGGAGTCAGGCTCTTGAAGCTCATGCTGCATCATTTGCGCAATTTAAAGTTCCTGGGAATGAAAATCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGTCAAGTTATATCGAAGTTGCATGTTATTGAGTTGGGGGCACAGCCAGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTCCCACCAGATTTTGCGGATGACTTTCCAGTTGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTCATTACCAAACTTGGCCTACTATTTGTTTACGATTTGGAGACAGCTACTGCCGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCTACGTCAGCTGGAGGCTTTTATGCTATCAACAGGAGAGGGCAGGTGTTATTGGCTACTGTTAATGAACAAACCATTGTGAACTTTGTCAGTGGTCAATTAAATAATTTGGAGCTAGCAGTTAATCTTGCCAAAAGAGGAAATCTTCCTGGCGCTGAGAAACTGGTAGTGGAACGTTTCCATGAACTATTTGCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAATCTCCACAAGGAATCCTTCGTACACCTGACACAGTTGCTAAATTTCAGAGTGTTCCTGTACAAGCTGGGCAAACTCCTCCTCTTTTGCAGTATTTTGGAACACTTTTGACGAGGGGAAAGCTGAATGCCTTTGAGTCAATAGAATTGTCTCGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTCGAGTGCAGTGAGGAGCTAGGGGATCTTGTTAAGACTGTAGACAATGATCTTGCTCTTAAAATATATATCAAAGCAAGAGCTACTCCGAAAGTTGTTGCTGCATTTGCTGAGAGGAGGGAGTTTGATAAAATTCTGATCTACTCTAAGCAGGTTGGGTACACGCCTGACTACCTCTTCCTTTTGCAAACAATTCTGCGGACCGACCCCCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTTCCCCACTTGATTATAACACAATAACCGATCTGTTTCTACAGAGAAACCTGATCCGTGAGGCAACTGCCTTTCTCCTAGATGTTCTAAAGCCGAATCTACCGGAACATGGATTCCTTCAGACAAAGGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCGATTTTGGCTAACGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGACTTTACGTGCGAGCTTTGCAACATTACACAGATTTGTCTGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGACTCAGTCACTTGTAGAGTTTTTTGGTACTCTGTCACAAGAATGGGCATTAGAGTGCATGAAAGATCTATTGATAGCCAATCTTAAAGGCAATCTGCAGTTAATTGTGCAGGTTGCTAAAGAATATTGTGAACAATTGGGCGTGGATGGCTGCATAAAACTTTTTGAGCAGTTTAGGTCATATGAAGGACTGTACTTTTTTCTTGGGTCATATTTGAGTTCAAGTGAGGATCCAGACGTTCACTTCAAGTACATTGAGGCAGCAGCAAAGACTGGTCAAATCAAAGAGGTTGAGCGTGTGACAAGAGAATCAAATTTCTACGATCCGGAGAAAACAAAAAAATTTCTAATGGAGGCTAAGCTTCCAGATGCACGACCTTTAATTAATGTTTGTGACCGTTTCGGATATGTTCCAGATCTAACACACTATCTATACACAAACAACATGCTTCGTTACGTTGAAGGTTATGTTCAGAAGGTGAACCCCGGGAATGCTCCTTTAGTTGTTGGGCAGCTGCTAGATGATGAGTGTCCTGAAGATTTTATCAGAGGCTTGATTCTTTCTGTTCGTTCTTTACTGCCAGTGGAGCCCCTCGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGTTTGCTTACACAGTTCTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGATAGCAATAACAACACAGAACATTTTCTCACAACCAACCCATACTATGATTCTCGAGTTGTGGGCAAGTACTGTGAGAACCGTGACCCCACCTTGGCAGTATTAGCTTACCAGAGAGGACAATGTGATGATGAACTTATCAATGTCGCGAACAGAAATTCTTTGTTCAAACTGCTAGCAAGATATGTTGTTGAGAGAATGGATGGTGATCTGTGGGCCAAAGTTCTTGATCCTGATAATGAGTACAGAAGGCAACTCATTGATCAGGTTGTCTCTACTGCCTTGCCTGAAAGCAATAGCCCTGAACAAGTTTCTGCAGCTGTCAAGGCTTTCATGACAGCTGATCTTCCTCATGAATTGATCGAACTTCTTGAGAAAATTGTGCTTCAGAATTCTGCATTCAGTGGGAACTTTAATTTGCAGAATCTTCTAATTTTGACAGCGATTAAGGCTGATCAATCCAGAGTTATGGATTATATTAATAGACTGGATAATTTTGATGGACCTGCTGTTGGAGAAATGGCTGTAGAAGCTCAGTTATACGAGGAAGCATATGCAATTTTCAAGAAGTTCAACTTGAACGTTCAAGCAGTTGATGTATTGTTAGACAATGTTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCAGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAAGCGCAACTCAGGGAAGGGCTATTAAGTGATGCAATTGAGTCATTTATACGAGCAGATGACGCCACACAATATTTGGATGTTATCCGTGCTGCTGAAGATTCTGATGTTTACCATGACTTGGTAAAATACTTGCTGATGGTAAGACAGAAGGCTAAAGAACCGAAGGTGGACAGTGAGCTTATTTATGCGTATGCAAAGATTGATAGGCTTAGTGACATTGAAGAGTTCATTCTTATGCCCAATGTTGCTAATCTTCAAAATGTTGGTGACCGGTTGTATGATGAAGAATTATATGAGGCTGCAAAAATCATATTTGCTTTTATATCTAATTGGTCTAAATTGGCTATAACGCTGGTCAAGTTAAAACAGTTCCAAGGTGCTGTTGATGCAGCAAGGAAAGCCAATAGCTCAAAAACCTGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCAGAGGAGTTTCGTTTGGCCCAGATATGTGGGCTCAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAACAGAGGTTGCTTCAATGAGCTAATATCTCTTATGGAAAGTGGTTTAGGGTTAGAACGAGCACATATGGGCATCTTCACTGAGTTAGGTGTTCTGTATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACCCGCCTCAATATTCCAAAACTCATAAGAGCCTGTGATGAACAACAGCATTGGAAAGAATTAACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCACCGGAAGCATGGGATCACCTGCAATTCAAAGATGTTATTGCGAAAGTTGCTAATGTGGAGTTGTATTACAAGGCTGTTCACTTCTATTTGCAAGAGCATCCTGATCTTATCAATGATGTTCTCAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGAGAAAGGCTGGCCACCTCCATCTTGTGAAGCCTTACATGGTTGCAGTTCAGAGCAACAATGTATCTGCTGTTAATGAAGCATTGAACGAGATATATGTTGAGGAGGAAGACTATGATAGATTGCGTGAGTCGATTGATTTGCATGATAACTTCGATCAAATAGGCCTTGCACAAAAGATTGAAAAACATGAGCTACTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCTATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGTGAGCGTGAAGTTGCCGAAGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCCTGTCTATTTGTTTGCTATGATTTAATACGGGCAGACGTTGTTCTTGAGCTGGCGTGGATTCACAATATGATTGACTTTGCATTCCCATATCTCTTGCAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGACAAAATTGAAGCACAGAAGGAAGTGAAGGCTAAAGAAAACGAAGAAAAAGATGTAGTTGCACAACAGAACATGTATGCTCAATTGTTGCCTCTTGCTTTACCCGCACCACCAATGCCTGGAATGGGAGGTGGTTTTGCTCCTCCCCCTCCAACGGGTGGACTGGGGATGCCACCTATGCCTCCTTATGGCATGCCCGCCATGGGTGGCGGTTACTGA | 5361 | 0.4223 | MAAANAPISMKEALTLPSIGINPQFITFTHVTMESDKYICVRETAPQNSVVIIDMTVPNQPLRRPITADSALMNPNSRILALKGRKYTITSNCPWYIYSMHDIASLLSKTPTSAVFLVFCPPITSDALMTRYDRMRLKSLIGGRVNMALSSSTTMAIWLAVGLHYFLEAQLQGTTQDHLQIFNIELKAKIKSYQMSEQVVFWKWISPKILGLVTQASVYHWSIEGDSEPVKMFDRTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGSMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFASKTLNAGQVISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSAGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESIELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPLDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTDLSDIKRVIVNTHAIETQSLVEFFGTLSQEWALECMKDLLIANLKGNLQLIVQVAKEYCEQLGVDGCIKLFEQFRSYEGLYFFLGSYLSSSEDPDVHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKKFLMEAKLPDARPLINVCDRFGYVPDLTHYLYTNNMLRYVEGYVQKVNPGNAPLVVGQLLDDECPEDFIRGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNTEHFLTTNPYYDSRVVGKYCENRDPTLAVLAYQRGQCDDELINVANRNSLFKLLARYVVERMDGDLWAKVLDPDNEYRRQLIDQVVSTALPESNSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADQSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAYAIFKKFNLNVQAVDVLLDNVHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLLSDAIESFIRADDATQYLDVIRAAEDSDVYHDLVKYLLMVRQKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWSKLAITLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHLQFKDVIAKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLHLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGEREVAEELLVYFIDQGKKECFASCLFVCYDLIRADVVLELAWIHNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQKEVKAKENEEKDVVAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPTGGLGMPPMPPYGMPAMGGGY | 1786 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal6g0234 | 1786 | Pfam | Clathrin-H-link | 454 | 519 | - | - | |
| Lal6g0234 | 1786 | SUPERFAMILY | ARM repeat | 542 | 878 | IPR016024 | - | |
| Lal6g0234 | 1786 | SUPERFAMILY | ARM repeat | 1281 | 1616 | IPR016024 | - | |
| Lal6g0234 | 1786 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 636 | 782 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | SUPERFAMILY | ARM repeat | 430 | 585 | IPR016024 | - | |
| Lal6g0234 | 1786 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 932 | 1071 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1373 | 1519 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | SUPERFAMILY | ARM repeat | 986 | 1145 | IPR016024 | - | |
| Lal6g0234 | 1786 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1522 | 1665 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | SUPERFAMILY | Clathrin heavy-chain terminal domain | 5 | 86 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Lal6g0234 | 1786 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1227 | 1368 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | Pfam | Region in Clathrin and VPS | 640 | 775 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | Pfam | Region in Clathrin and VPS | 786 | 925 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | Pfam | Region in Clathrin and VPS | 1230 | 1366 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | Pfam | Region in Clathrin and VPS | 935 | 1068 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | Pfam | Region in Clathrin and VPS | 1525 | 1664 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | Pfam | Region in Clathrin and VPS | 1078 | 1216 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | Pfam | Region in Clathrin and VPS | 1377 | 1516 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | Pfam | Clathrin propeller repeat | 239 | 282 | IPR022365 | - | |
| Lal6g0234 | 1786 | Pfam | Clathrin propeller repeat | 20 | 55 | IPR022365 | - | |
| Lal6g0234 | 1786 | SUPERFAMILY | Clathrin heavy-chain terminal domain | 176 | 428 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Lal6g0234 | 1786 | SMART | CLH_2 | 1522 | 1681 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | SMART | CLH_2 | 785 | 927 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | SMART | CLH_2 | 932 | 1071 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | SMART | CLH_2 | 1078 | 1223 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | SMART | CLH_2 | 1227 | 1368 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | SMART | CLH_2 | 1373 | 1519 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | SMART | CLH_2 | 636 | 778 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | PANTHER | CLATHRIN HEAVY CHAIN | 1 | 91 | - | - | |
| Lal6g0234 | 1786 | PANTHER | CLATHRIN HEAVY CHAIN | 167 | 1784 | - | - | |
| Lal6g0234 | 1786 | Gene3D | - | 1627 | 1723 | - | - | |
| Lal6g0234 | 1786 | Pfam | Clathrin, heavy-chain linker | 429 | 452 | IPR015348 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Lal6g0234 | 1786 | PIRSF | CHC | 3 | 101 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Lal6g0234 | 1786 | PIRSF | CHC | 167 | 1766 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Lal6g0234 | 1786 | SUPERFAMILY | ARM repeat | 1136 | 1280 | IPR016024 | - | |
| Lal6g0234 | 1786 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1078 | 1223 | IPR000547 | GO:0006886|GO:0016192 | |
| Lal6g0234 | 1786 | Coils | Coil | 1702 | 1736 | - | - | |
| Lal6g0234 | 1786 | Gene3D | Tetratricopeptide repeat domain | 1141 | 1281 | IPR011990 | GO:0005515 | |
| Lal6g0234 | 1786 | Gene3D | Tetratricopeptide repeat domain | 1282 | 1621 | IPR011990 | GO:0005515 | |
| Lal6g0234 | 1786 | Gene3D | Tetratricopeptide repeat domain | 987 | 1140 | IPR011990 | GO:0005515 | |
| Lal6g0234 | 1786 | Coils | Coil | 1562 | 1582 | - | - | |
| Lal6g0234 | 1786 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 1 | 91 | - | - | |
| Lal6g0234 | 1786 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 167 | 1784 | - | - | |
| Lal6g0234 | 1786 | Gene3D | - | 1 | 462 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Lal6g0234 | 1786 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 785 | 927 | IPR000547 | GO:0006886|GO:0016192 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal6g0234 | Lal-Chr6 | 1533633 | 1547617 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal6g0234 | K04646 | - | gmx:100786617 | 2985.67 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal6g0234 | 6 | 1533633 | 1547617 | Lal6g0234 | 6 | 1533633 | 1547617 | ECH | |
| Lal4g1581 | 4 | 20010386 | 20021698 | Lal6g0234 | 6 | 1533633 | 1547617 | PCT | |
| Lal17g1576 | 17 | 17209934 | 17220902 | Lal6g0234 | 6 | 1533633 | 1547617 | PCT | |
| Lal6g0234 | 6 | 1533633 | 1547617 | Lal4g1581 | 4 | 20010386 | 20021698 | PCT | |
| Lal6g0234 | 6 | 1533633 | 1547617 | Lal17g1576 | 17 | 17209934 | 17220902 | PCT |