Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1576 ATGGCCGCCGCCAACGCTCCCATCTCCATGCGTGAAACTCTCACCTTACCAAGCGTTGGGATAAATCCACAGTTCATGACATTCACGCACGTGACGATGGAGTCAGATAAGTATATATGCGTTCGTGAAACTTCTCCGCAGAATAGCGTTGTGATTATTGATATGAACATGCCGATGCAACCATTGAGGAGGCCTATCACTGCAGATTCTGCTCTTATGAATCCTAATTCTAGAATCCTTGCTTTGAAAGCCCAACTCCAAGGAACAACGCAAGATCACCTACAAATATTTAATATTGAGATGAAAGCAAAGGTGAAATCATATCAGATGCCTGAGCAGGTAGTCTTTTGGAAGTGGATTAGCCCTAAACTGTTGGGTCTTGTGACACAGACCTCTGTATACCATTGGTCAATTGAAGGTGAGTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAGCAATCAGATAATTAACTATCGATGTGACCCTACGGAAAAGTGGCTGGTCTTAATTGGTATTGCCCCTGGTTCCCCCGAGAGGCCACAATTGGTTAAAGGAAACATGCAACTCTTCTCTGTGGATCAACAGCGCAGTCAGGCTCTTGAAGCACACGCTGCTGCATTTGCACAATTTAAGGCATGTGTCTTTATGAATGTTCCTGGAAATGAGAATCCTTCTGTTTTGATTTCTTTTGCCACAAAGACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTTATTGAGCTGGGTGCACAGCCGGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCCCATAAATACAGTTTGATATATGTGATTACCAAACTTGGTCTTCTATTCGTCTATGATTTGGAGACAGCTACAGCAGTATATAGGAATAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCTACATCTGCAGGGGGCTTTTATGCAATTAACAGGAGAGGCCAGGTGTTATTGGCTACTGTTAATGAACAAACCATCGTGAATTTTGTCAGTGGTCAATTAAACAATTTGGAGCTAGCTGTTAATCTCGCCAAGAGAGGAAATCTTCCTGGTGCTGAGCAGCTGGTAGTGGAACGTTTCCATGAACTGTTTGCCCAAACGAAGTATAAAGAAGCAGCGGAGCTTGCTGCTGAGTCTCCACAAGGAATCCTTCGTACACCCGATACAGTTGCCAAATTCCAGAGCGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTGTTGCAGTACTTTGGAACACTTTTAACAAGAGGAAAGCTGAATGCCTTTGAGTCATTGGAATTGTCACGACTGGTTGTGAACCAGAACAAGAAAAACCTTTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTTGTAAAGACTGTGGACAATGATCTTGCTTTAAAAATATATATCAAAGCCAGAGCTACCCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAATTTGACAAAATCCTGATATACTCTAAGCAGGTTGGGTACACACCCGACTATCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAGGGTGCTGTTAATTTCGCCTTAATGATGTCTCAAATGGAGGGAGGTTGCCCAATTGACTACAACACCATAACTGATCTGTTTCTTCAGAGAAACTTGATCCGTGAGGCTACTGCCTTTCTCCTAGATGTTTTGAAGCCAAATCTTCCTGAACACGGGTTCCTACAAACAAAGGTGTTGGAGATAAATCTGGTAACTTTCCCCAATGTTGCTGATGCAATTTTAGCTAATGGCATGTTCAGCCATTATGACCGTCCACGCATTGCCCAACTTTGTGAAAAAGCCGGTCTTTATGTCCGAGCTTTACAACATTACACAGAGTTGCCAGATATAAAGCGTGTGATTGTAAATACCCATGCAATTGAACCACAGTCACTTGTAGAGTTTTTTGGTACTCTGTCTCGGGAATGGGCATTAGAGTGCATGAAAGATCTATTGTTGGTCAATCTTCGAGGAAACCTGCAGATAATTGTGCAAGTTGCTAAAGAATATTGTGAACAATTGGGTGTTGATGGTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGACTGTATTTTTTCCTTGGGTCATATTTGAGCTCCAGTGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCAGCTAAGACTGGCCAAATCAAAGAGGTCGAGCGTGTGACTAGAGAATCGAGTTTCTATGATCCCGAGAAAACAAAGAACTTTCTTATGGAAGCTAAGCTTCCAGATGCGCGGCCTCTGATTAATGTTTGTGACCGTTTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAGCAACATGCTTCGCTACATTGAAGGTTATGTCCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGGCAGCTGCTAGATGATGAGTGTCCAGAAGATTTTATCAAAGGCTTGATTCTTTCTGTTCGATCATTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGTGGAATCGCCTTCGCTTGCTCACACAGTTCTTGGAACATCTTGTATCTGAGGGAAGCCAGGATGTACATGTTCACAATGCATTGGGTAAAATCATCATAGATAGCAACAATAACCCAGAGCATTTTCTCACTACAAACCCATACTATGATTCTCGAGTTGTGGGCAAATATTGTGAGAAACGTGATCCAACCTTGGCAGTTGTAGCTTACAGGCGAGGACAATGTGATGATGAACTTATCAATGTTACAAACAAAAATTCTTTGTTCAAACTACAAGCAAGATATGTTGTCGAGAGGATGGATGGTGACCTATGGGAGAAAGTTCTTATCCCTGATAATGTCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACTGCTCTTCCGGAAAGCAAGAGCCCTGAACAAGTTTCTGCAGCTGTTAAGGCTTTCATGACTGCTGATCTACCTCATGAATTGATTGAGCTTCTTGAGAAGATTGTGCTTCAGAATTCTGCCTTCAGTGGGAACTTTAATTTGCAGAATCTGCTTATTTTGACCGCGATAAAGGCTGACCCATCCAGAGTTATGGATTATATTAATAGACTGGATAATTTTGATGGGCCTGCAGTTGGAGACATGGCTGTTGAAGCTCAGTTATATGAGGAAGCCTTTGCAATATTCAAGAAGTTCAACTTAAATGTTCAAGCAGTCAATGTCTTGCTAGATAACATTCACAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTAAGGGATGGGCTAGTAAGTGACGCAATTGAGTCATTTATACGAGCAGATGATGCCACCCAATTCTTGGATGTTATCCGTGCTGCTGAAGGTACCGATGTTTACCATGACTTGGTGAGATACTTGCTGATGGTAAGGCAGAAGTCCAAAGAACCCAAGGTGGACAGTGAGCTTATTTATGCATATGCAAAGATTGACAGGCTTAGTGACATTGAGGAGTTCATTCTTATGCCGAATGTGGCCAATCTGCAAAATGTTGGCGACCGATTGTATGATGAAGAGCTATATGAGGCTGCAAAAATTATATATGCATTTATTTCTAACTGGGCCAAATTAGCTGTCACACTTGTGAAGTTGAAACAGTTCCAAGGTGCTGTTGATGCGGCAAGGAAAGCTAACAGCGCAAAAACATGGAAGGAAGTTTGCTTTGCATGTGTCGATGCAGAGGAGTTCCGTTTGGCCCAAATATGTGGACTCAACATTATTGTTCAGGTGGACGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCCCTCATGGAGAGTGGTTTAGGATTAGAACGAGCACATATGGGCATCTTCACCGAATTAGGAGTTCTGTATGCTAGATACCGTCCTGAGAAGCTTATGGAGCATATCAAACTATTTGCCACCCGACTCAATATTCCAAAACTCATAAGAGCTTGTGATGAACAACAGCATTGGAGGGAACTGACCTATTTGTATATCCAATATGACGAATTTGATAATGCTGCAACAACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTATTGCCAAAGTTGCTAATGTGGAGTTGTATTACAAGGCTGTCCACTTCTATTTGCAAGAGCACCCAGATCTTATCAATGATGTTCTGAATGTCCTTGCCCTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCACCTCCGCCTGGTCAAGCCATACATGGTTGCAGTTCAGAGCAACAATGTGTCTGCTGTTAATGAAGCCTTGAATGAGATATATGTTGAGGAGGAAGACTATGATAGATTGCGTGAGTCAATTGATTTTCATGACAACTTTGATCAAATTGGCCTTGCACAGAAGATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCTGGTAGGTGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAATCTTTACAAAGATGCCATGGAGACAGCGTCTCAATCTGGTGAACGGGAACTGGCGGAGGAGTTGCTTGTTTATTTTATCGATCAGGGAAAGAAGGAATGCTTTGCCTCATGCCTCTTTGTTTGCTATGATTTGATCCGGGCAGACGTTGTTCTTGAACTGTCTTGGATGCACAATATAATTGACTTTGCTTTCCCGTATCTCTTACAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGACAAAATTGAAGCACGGATCGAAGAGAAGGCTAAAGAAAAAGAAGAAAAGGATGTAATTGCTCAACAGAATATGTATGCTCAATTGTTGCCTCTTGCATTGCCTGCACCACCAATGCCTGGAATGGGAGGAGGCTACGCCCCTCCTCCTCCAATGGGTGGTGGATTTGGGATGCCGCCAATGCCTCCTTATGGCATGCCACCCATGGGCAGTGGCTACTGA 5130 0.4277 MAAANAPISMRETLTLPSVGINPQFMTFTHVTMESDKYICVRETSPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKVKSYQMPEQVVFWKWISPKLLGLVTQTSVYHWSIEGESEPVKMFERTANLASNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAAAFAQFKACVFMNVPGNENPSVLISFATKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSAGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEQLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPIDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDGCIKLFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRWNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLIPDNVYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGDMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLRDGLVSDAIESFIRADDATQFLDVIRAAEGTDVYHDLVRYLLMVRQKSKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFATRLNIPKLIRACDEQQHWRELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIAKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDFHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADVVLELSWMHNIIDFAFPYLLQFIREYTGKVDELVKDKIEARIEEKAKEKEEKDVIAQQNMYAQLLPLALPAPPMPGMGGGYAPPPPMGGGFGMPPMPPYGMPPMGSGY 1709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1576 1709 Pfam Region in Clathrin and VPS 707 846 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 Pfam Region in Clathrin and VPS 856 981 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 Pfam Region in Clathrin and VPS 1447 1586 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 Pfam Region in Clathrin and VPS 563 696 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 Pfam Region in Clathrin and VPS 1154 1288 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 Pfam Region in Clathrin and VPS 1000 1137 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 Pfam Region in Clathrin and VPS 1296 1438 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 SUPERFAMILY ARM repeat 463 799 IPR016024 -
Lal17g1576 1709 Gene3D - 1 383 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lal17g1576 1709 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 557 703 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 PANTHER CLATHRIN HEAVY CHAIN 1 1707 - -
Lal17g1576 1709 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 853 993 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 SUPERFAMILY ARM repeat 1203 1538 IPR016024 -
Lal17g1576 1709 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1149 1290 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 Pfam Clathrin-H-link 375 440 - -
Lal17g1576 1709 SUPERFAMILY Clathrin heavy-chain terminal domain 5 349 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lal17g1576 1709 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1000 1145 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 Gene3D Tetratricopeptide repeat domain 909 1063 IPR011990 GO:0005515
Lal17g1576 1709 Gene3D Tetratricopeptide repeat domain 1064 1203 IPR011990 GO:0005515
Lal17g1576 1709 Gene3D Tetratricopeptide repeat domain 1204 1543 IPR011990 GO:0005515
Lal17g1576 1709 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 706 848 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1707 - -
Lal17g1576 1709 Pfam Clathrin, heavy-chain linker 350 373 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lal17g1576 1709 SUPERFAMILY ARM repeat 1060 1202 IPR016024 -
Lal17g1576 1709 Coils Coil 1484 1504 - -
Lal17g1576 1709 Pfam Clathrin propeller repeat 20 56 IPR022365 -
Lal17g1576 1709 Pfam Clathrin propeller repeat 154 197 IPR022365 -
Lal17g1576 1709 SUPERFAMILY ARM repeat 908 1073 IPR016024 -
Lal17g1576 1709 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1295 1441 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 PIRSF CHC 3 1689 IPR016341 GO:0016192|GO:0032051|GO:0071439
Lal17g1576 1709 SMART CLH_2 1149 1290 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 SMART CLH_2 1295 1441 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 SMART CLH_2 853 993 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 SMART CLH_2 1444 1603 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 SMART CLH_2 706 848 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 SMART CLH_2 557 699 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 SMART CLH_2 1000 1145 IPR000547 GO:0006886|GO:0016192
Lal17g1576 1709 Gene3D - 1549 1645 - -
Lal17g1576 1709 SUPERFAMILY ARM repeat 351 506 IPR016024 -
Lal17g1576 1709 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1444 1587 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1576 Lal-Chr17 17209934 17220902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1576 K04646 - gmx:547986 3120.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1576 17 17209934 17220902 Lal17g1576 17 17209934 17220902 ECH
Lal4g1581 4 20010386 20021698 Lal17g1576 17 17209934 17220902 LSH
Lal17g1576 17 17209934 17220902 Lal6g0234 6 1533633 1547617 PCT
Lal6g0234 6 1533633 1547617 Lal17g1576 17 17209934 17220902 PCT