Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1581 ATGTCACTTGAATTTCTGAAGTATCTTCATTTTGCTTCTCTCTCTTCTCCGTTTCTCTCTCTTTTCGCTTTAGAGTCTCCAATTTTCTCCCAGATCTCTCACCTATTTCGATCCTCACTCTTTTCACGCTTACTTTCGCCGCCACCGTTCCTCCGTCGCCGCCACCATGTCCGCCGCCACCGCTCCCATCTCCATGCGCGAAACTCTCACAGTAACTACTTTTTCTTCTTATTCTTACCGAGTGTTGGAATAAATCCACAGTTCATGACGTTCATGCACGTGACGATGGAGTCTGATAAGTATATATGCGTTAGAGAAACGTCTCCTCAGAATAGCGTGGTTATTATTGATATGAACATGCCGATGCAACCTTTGAGGAGACCTATTACTGCAGATTCTGCTATTATGAATCCTAATTCTAGAATCCTTGCTTTGAAAGCTGTTGGCCTTGAGAGAAAATTCGAGGTTTTAGTCGAACTTGCTATGTGCTTTTGCTGCACCTTAATTATTACTATTTACTTTTGGGTTATATTCACTTATAAACTATGTCCTCTTCTTGAAGCCCATCTCCAAGGAACGACACAAGATCACCTGCAAATATTTAATATTGAGATGAAAGCAAAGGTGAAATCGTATCAGATGCCTGAGCAGGTAGTCTTTTGGAAGTGGATTAGCCCCAAGTTGTTGGGTCTTGTGACACAGACCTCTGTATACCATTGGTCAATTGAAGGTGAATCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAGATAATTAATTATCGATGTGACCCTACAGAAAAGTGGTTGGTCTTGATTGGTATCGCTCCTGGTTCCCCTGAGAGACCACAATTGGTTAAAGGAAACATGCAACTCTTCTCTGTGGATCAACAACGTAGTCAGGCTCTTGAAGCGCATGCTGCAGCATTTGCTCAATTTAAGGTTCCTGGAAATGAAAATCCTTCTGTTTTGATTTCTTTTGCCACAAAAACGCTTAATGCTGGGCAAATTATATCCAAGTTGCATGTTATTGAGATGGGTGCACAGCCAGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGACTTTCCAGTTGCCATGCAGATATCTCACAAATACAGTTTGATATATGTGATTACCAAACTTGGTCTCTTGTTCGTCTATGATTTGGAGACAGCTACCGCAGTATATAGGAATAGAATAAGTCCAGATCCTATATTTTTGACATCAGAAGCTACATCAGCAGGGGGCTTTTATGCAATTAACAGGAGAGGTCAGGTGTTATTGGCTACTGTTAATGAACAAACCATCGTGAATTTTGTCAGTGGTCAATTAAACAATTTGGAACTAGCCGTTAATCTAGCCAAGAGAGGAAATCTTCCTGGTGCTGAACAGCTGAGATTAACCATCATGTTGACATTCCAGGTAGTGGAACGATTCCATGAACTGTTTGCCCAAACGAAATATAAAGAAGCAGCTGAGCTTGCTGCTGAGTCCCCACAGGGAATCCTTCGCACACCCGATACAGTTGCAAAATTTCAGAGTGTTCCTGTTCAAGCTGGGCAAACTCCTCCACTGTTGCAGTTCTTTGGAACACTTTTAACAAGAGGAAAGCTGAATGCCTTTGAGTCATTGGAATTGTCACGACTGGTTGTGAACCAGAACAAGAAAAATCTTTTGGAGAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTTGTAAAGACTGTGGACAATGATCTTGCCTTAAAAATATATATAAAAGCCAGAGCTACCCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAATTTGATAAAATCTTGATATACTCTAAGCAGGTTGGGTACACTCCCGACTATCTCTTCATTTTTCAAACGATTCTCCGAACAGATCCTCAGGGTGCTGTTAATTTTGCCTTAATGATGTCTCAAATGGAGGGAGGCTGCCCAGTTGACTATAACACCATAACTGATCTGTTTCTTCAGAGAAACTTGATCCGTGAGGCTACTGCCTTTCTCCTAGATGTTTTGAAGCCAAATCTACCTGAACATGGGTTCCTTCAAACAAAGGTGCTGGAGATAAATCTGGTAACTTTCCCTAATGTTGCTGATGCAATTTTAGCTAATGGCATGTTCAGCCATTATGACCGTCCACGTATTGCCCAACTTTGTGAAAAAGCTGGTCTTTATGTCAGAGCTTTACAACACTACACAGAGTTGCCAGATGTAAAACGTGTGATTGTAAATACCCATGCAATTGAACCACAGTCACTTGTTGAATTTTTTGGTACTCTGTCTCGAGAATGGGCATTAGAGTGCATGAAGGACCTATTGCTGGTCAACCTTCGAGGAAATCTGCAGATAATTGTTCAACTTACTTATGTCCAGGTTGCTAAAGAATATTGTGAACAATTGGGTGTTGATGGTTGCATAAAACTTTTTGAGCAGTTCAAGTCATATGAAGGACTATATTTTTTCCTTGGATCATATTTGAGCTCCAGTGAGGATCCTGATATTCACTTTAAGTACATTGAGTCAGCCGCAAAGACTGGACAAATCAAAGAGGTCGAGCGTGTGACTAGAGAATCAAGTTTTTATGATCCCGAGAAGACGAAAAACTTTCTAATGGAAGCTAAGCTTCCAGATGCACGGCCTCTGATTAATGTTTGTGACCGTTTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAGCAACATGCTTCGCTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGGCAGCTACTAGATGATGAGTGTCCAGAAGATTTTATCAAAGGCTTGATTCTATCTGTTCGTTCATTACTGCCAGTGGAGCCCCTCGTGGAAGAATGTGAGAAGAGAAATCGCCTTCGCTTGCTCACACAGTTCTTGGAACATCTTGTATCTGAAGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATCATTGATAGCAACAACAACCCAGAGCATTTTCTCACTACCAACCCATACTATGATTCTCGAGTTGTGGGTAAATATTGTGAGAAACGTGACCCCACCTTGGCAGTTGTAGCTTACAGGCGAGGGCAATGTGATGATGAACTTATCAATGTCACGAACAAAAATTCTTTGTTCAAACTACAAGCAAGATATGTTGTGGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTGTCCCTGATAATGCCTACAGAAGACAACTTATTGATCAGGTTGTATCTACTGCTCTGCCGGAAAGCAAGAGCCCTGAACAAGTTTCTGCAGCTGTGAAGGCTTTCATGACTGCTGATCTACCTCATGAATTGATTGAGCTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTTAGTGGGAACTTTAATTTGCAGAATCTACTTATTTTGACAGCGATAAAGGCTGATTCATCCAGAGTTATGGATTATGTTAATAGACTGGATAATTTTGATGGGCCTGCAGTTGGAGACATGGCTGTTGAAGCTCAACTATATGAGGAAGCATTTGCAATATTCAAGAAGTTCAACTTAAATGTTCAAGCAGTCAATGTCTTGCTAGATAATATTCATAGCATTGATAGGGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTCAGGGAAGGATTAGTAAGTGATGCAATTGAGTCATTTATACGAGCAGATGATGCCACCCAATTCTTGGATGTTATACGTGCTTCTGAAGATGCCAATGTTTACCATGACTTGGTGAGATACTTGCTGATGGTAAGGCAGAAGTCCAAAGAACCCAAGGTGGACAGTGAGCTTATTTATGCGTATGCGAAGATTGACAGGCTTAGTGACATTGAGGAGTTCATTCTTATGCCGAATGTGGCCAATCTGCAAAATGTTGGTGACCGATTGTATGACGAAGAACTATATGAGGCTGCAAAAATTTTATATGCTTTTATATCTAATTGGGCCAAGTTAGCAGTCACACTTGTGAAGTTGAAACAGTTCCAAGGTGCCGTTGATGCGGCAAGGAAAGCTAACAGCGCAAAAACATGGAAAGAAGTTTGCTTTGCATGTGTTGATGCAGAGGAGTTCCGTTTGGCCCAGATATGTGGACTCAACATTATTGTTCAGTTTTTATCTGCTTCAAATTTATCAAGTTTGAATAGTTTTGAGCTTTCAGAATGTAATGGAAAAACAATGTCCATAAAAGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCCCTCATGGAGAGTGGTTTAGGATTAGAACGAGCACATATGGGCATCTTCACTGAGTTAGGAGTTTTGTATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTTGCCACCCGACTCAATATTCCTAAACTCATAAGAGCTTGTGATGAACAACAGCATTGGAAGGAACTCACCTATTTGTATATCCAATATGACGAGTTTGATAATGCTGCAACAACCATTATGAACCATTCTCCTGAAGCATGGGATCACATGCAATTCAAAGATGTTATTGCCAAAGTTGCTAATGTTGAGTTGTATTACAAGGCTGTTCACTTCTATTTGCAAGAGCATCCAGATCTTATCAATGATGTTCTGAATGTGCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCACCTCCGCCTTGTCAAGCCATACATGGTCGCAGTTCAGAGCAACAACGTGTCTGCTGTTAATGAAGCGTTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGTGAGTCAATTGATTTGCATGATAACTTTGATCAAATTGGCCTTGCACAGAAGATTGAAAGGCATGAGCTTCTTGAGATGAGACGTGTAGCTGCTTATATTTACAAGAAGGCTGGTAGGTGGAAGCAATCCATTGCCTTGTCAAAGAAGGATAACCTTTATAAAGATGCCATGGAGACGGCCTCTCAATCTGGAGAACGGGAACTTGCGGAGGAGTTGCTCGTTTATTTCATTGATCAGGGAAAGAAGGAATGTTTTGCCTCATGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACGTTGTTCTTGAATTGGCTTGGATGCACAACATGATCGACTTTGCCGTCCCATATCTCTTACAGTTTGTCCGTGAGTACACTGACAAAGTTGATGAACTGGTGAAGGACAAAATTGAAGCACAGATCGATGAGAAGACTAAAGAAAAAGAAGAAAAGGAAGTCATCGCACAGCAGAATATGTATGCTCAATTGTTGCCTCTTGCTTTGCCTGCACCACCAATGCCTGGAATGGGAGGAGGTTTTGCCCCTCCCCCTCCAATGGGTGGAGGCTTTGCTCCTCCACCTCCAATGGGTGGTGGATTTGGGATGCCACAAATGCCTCCTTATGGCATGCCACCCAATGTCAGCAGCTACTGA 5571 0.4166 MSLEFLKYLHFASLSSPFLSLFALESPIFSQISHLFRSSLFSRLLSPPPFLRRRHHVRRHRSHLHARNSHSNYFFFLFLPSVGINPQFMTFMHVTMESDKYICVRETSPQNSVVIIDMNMPMQPLRRPITADSAIMNPNSRILALKAVGLERKFEVLVELAMCFCCTLIITIYFWVIFTYKLCPLLEAHLQGTTQDHLQIFNIEMKAKVKSYQMPEQVVFWKWISPKLLGLVTQTSVYHWSIEGESEPVKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAAAFAQFKVPGNENPSVLISFATKTLNAGQIISKLHVIEMGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSAGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEQLRLTIMLTFQVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQFFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFIFQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDVKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQLTYVQVAKEYCEQLGVDGCIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIESAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLVPDNAYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADSSRVMDYVNRLDNFDGPAVGDMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRASEDANVYHDLVRYLLMVRQKSKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKILYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQFLSASNLSSLNSFELSECNGKTMSIKVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFATRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIAKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIERHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADVVLELAWMHNMIDFAVPYLLQFVREYTDKVDELVKDKIEAQIDEKTKEKEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMGGGFAPPPPMGGGFGMPQMPPYGMPPNVSSY 1856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1581 1856 Pfam Clathrin, heavy-chain linker 448 471 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lal4g1581 1856 PANTHER CLATHRIN HEAVY CHAIN RELATED 186 1413 - -
Lal4g1581 1856 PANTHER CLATHRIN HEAVY CHAIN RELATED 75 147 - -
Lal4g1581 1856 PANTHER CLATHRIN HEAVY CHAIN RELATED 1422 1833 - -
Lal4g1581 1856 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1581 1724 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 SUPERFAMILY ARM repeat 1314 1675 IPR016024 -
Lal4g1581 1856 Gene3D Tetratricopeptide repeat domain 1174 1314 IPR011990 GO:0005515
Lal4g1581 1856 Gene3D Tetratricopeptide repeat domain 1422 1680 IPR011990 GO:0005515
Lal4g1581 1856 Gene3D Tetratricopeptide repeat domain 1021 1173 IPR011990 GO:0005515
Lal4g1581 1856 Gene3D Tetratricopeptide repeat domain 1315 1421 IPR011990 GO:0005515
Lal4g1581 1856 PANTHER CLATHRIN HEAVY CHAIN 1422 1833 - -
Lal4g1581 1856 PANTHER CLATHRIN HEAVY CHAIN 186 1413 - -
Lal4g1581 1856 PANTHER CLATHRIN HEAVY CHAIN 75 147 - -
Lal4g1581 1856 Gene3D - 74 480 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lal4g1581 1856 SUPERFAMILY ARM repeat 449 613 IPR016024 -
Lal4g1581 1856 Pfam Clathrin propeller repeat 258 301 IPR022365 -
Lal4g1581 1856 Pfam Clathrin propeller repeat 83 119 IPR022365 -
Lal4g1581 1856 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1432 1578 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1260 1401 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 Pfam Region in Clathrin and VPS 1584 1723 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 Pfam Region in Clathrin and VPS 670 803 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 Pfam Region in Clathrin and VPS 1111 1249 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 Pfam Region in Clathrin and VPS 968 1092 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 Pfam Region in Clathrin and VPS 819 958 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 Pfam Region in Clathrin and VPS 1265 1399 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 Pfam Region in Clathrin and VPS 1439 1575 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 PIRSF CHC 1415 1819 IPR016341 GO:0016192|GO:0032051|GO:0071439
Lal4g1581 1856 PIRSF CHC 60 183 IPR016341 GO:0016192|GO:0032051|GO:0071439
Lal4g1581 1856 PIRSF CHC 184 1422 IPR016341 GO:0016192|GO:0032051|GO:0071439
Lal4g1581 1856 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 664 810 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 818 960 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 SUPERFAMILY Clathrin heavy-chain terminal domain 78 447 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lal4g1581 1856 SUPERFAMILY ARM repeat 1169 1313 IPR016024 -
Lal4g1581 1856 SMART CLH_2 1260 1401 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 SMART CLH_2 1581 1740 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 SMART CLH_2 818 960 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 SMART CLH_2 664 806 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 SMART CLH_2 965 1104 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 SMART CLH_2 1432 1578 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 SMART CLH_2 1111 1256 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 SUPERFAMILY ARM repeat 570 911 IPR016024 -
Lal4g1581 1856 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1111 1256 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 Coils Coil 1773 1793 - -
Lal4g1581 1856 SUPERFAMILY ARM repeat 1019 1186 IPR016024 -
Lal4g1581 1856 Gene3D - 1686 1782 - -
Lal4g1581 1856 Coils Coil 1621 1641 - -
Lal4g1581 1856 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 965 1104 IPR000547 GO:0006886|GO:0016192
Lal4g1581 1856 Pfam Clathrin-H-link 473 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1581 Lal-Chr4 20010386 20021698 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1581 K04646 - gmx:547986 3077.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1581 4 20010386 20021698 Lal4g1581 4 20010386 20021698 ECH
Lal4g1581 4 20010386 20021698 Lal17g1576 17 17209934 17220902 LSH
Lal4g1581 4 20010386 20021698 Lal6g0234 6 1533633 1547617 PCT
Lal6g0234 6 1533633 1547617 Lal4g1581 4 20010386 20021698 PCT