Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0219 ATGGAAGCTATTAACACATTCTTAGCCATTTTTGTTCTCCTAATAACTTTAGCATTGTCTTTATCAAATGCCAAAATTCAAGAACATGAGTTTGTTGTTCAAGCAACTCCAGTGAAGAGGCTGTGCAACACCCACAGTGCCATCACAGTGAATGGACAATTCCCTGGGCCAACATTGGAAGTCAACAATGGAGACACTTTGGTCGTCAAAGTCATTAACAGAGCACGTTATAATGTCACCATTCACTGGCATGGTATTCGGCAAATGAGAACAGGATGGGCTGATGGGCCAGAATTTGTGACTCAATGTCCAATTCGTCCAGGAGAAAGTTATACATATCGGTTTACAATTCAAGGACAAGAAGGCACACTTTGGTGGCATGCTCATAGCTCATGGTTAAGAGCCACCGTTTATGGAGCATTAATCATTCATCCCATGCAAGGAGAGTCATACCCTTTCCCTAAGCCTAACCGCGAGACACCCATTCTTCTAGGGGAATGGTGGGACGCAAATCCCATAGATGTTGTGAGGCAAGCCACAGAGACAGGAGGAGCACCAAATGTGTCTGATGCTTACACTGTCAATGGTCAACCTGGTGATCTTTATAAGTGCTCTACCCAAGGCACTACAATTGTTCCAATAGATTCAGGAGAGACCAACCTCGTTCGTGTAATCAATGCTGCACTCAATCAACCACTTTTCTTCACTATTGCAAACCACAAGTTCACAGTGGTTGGTGCTGATGCCGCATACCTCAAACCTTTTACCACCACAGTTCTAATGCTAGGTCCTGGCCAAACCACTGATGTTCTCATCAAAGGTGACCAACCACCTTCAAGATACTATATTGCAGCACGTGCTTATCAATCAGCCCAAAATGCTGGATTTGATAACACCACCACCACGGCCATTCTTGAATATAAATCAGCACCATGTCCTTCTAAGGGTGTAGCTGCAATTAAACCACTTATGCCATCTCTACCTGCTTATAATGACACTAACACTGTCACTACCTTCAGCAAAAGCCTTAGGAGCCCAAGAAGAGTTGAGGTTCCTACAGAAATAGATGAGAATCTTTTCTTCACTATTGGCTTAGGACTTGACAATTGTCCACCAAATTTCAACTCAAACCAATGTCAAGGTCCTAATGGAACAAGGTTCACTGCTAGCATGAACAATGTGTCTTTTGTTCTCCCAAGCAATATTTCAATCCTGCAGGCTCTACACCTTGGAGTTCAAGGAGTGTTCACCACTGATTTTCCCACAAACCCTCCTCTGCAATTTGATTACACCGGTAACGTTAGCCGTTCATTGTGGCAACCGATTTCGGGGACTAAAGTGACTAAGTTGAAGTTTGGATCAAGGGTGCAGATTGTGTTGCAGGACACAAGCATTGTTACCCCGGAGAACCACCCTATTCATCTTCATGGCTATGATTTCTATGTTGTAGCTGAGGGATTTGGAAACTTTGACCCCAAGAAAGATACTTCAAAATTCAACCTTGTTGATCCACCTCAAAGGAACACAGTAGCAGTACCTGTGAATGGATGGGCAGTTATCAGATTTGTTGCTGATAACCCAGGTGCATGGATTATGCATTGTCACTTGGATGTTCACATTGGTTGGGGTTTGGCCACAGTGCTCTTAGTAGATAATGGCATTGGACTATTGGAATCCATAGAGGCCCCTCCACAGGACCTACCTCTATGTTAG 1713 0.4384 MEAINTFLAIFVLLITLALSLSNAKIQEHEFVVQATPVKRLCNTHSAITVNGQFPGPTLEVNNGDTLVVKVINRARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPGESYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPMQGESYPFPKPNRETPILLGEWWDANPIDVVRQATETGGAPNVSDAYTVNGQPGDLYKCSTQGTTIVPIDSGETNLVRVINAALNQPLFFTIANHKFTVVGADAAYLKPFTTTVLMLGPGQTTDVLIKGDQPPSRYYIAARAYQSAQNAGFDNTTTTAILEYKSAPCPSKGVAAIKPLMPSLPAYNDTNTVTTFSKSLRSPRRVEVPTEIDENLFFTIGLGLDNCPPNFNSNQCQGPNGTRFTASMNNVSFVLPSNISILQALHLGVQGVFTTDFPTNPPLQFDYTGNVSRSLWQPISGTKVTKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYVVAEGFGNFDPKKDTSKFNLVDPPQRNTVAVPVNGWAVIRFVADNPGAWIMHCHLDVHIGWGLATVLLVDNGIGLLESIEAPPQDLPLC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0219 570 CDD CuRO_2_LCC_plant 161 307 IPR034285 -
Lal6g0219 570 Pfam Multicopper oxidase 420 552 IPR011706 GO:0005507|GO:0016491
Lal6g0219 570 PANTHER MULTI-COPPER OXIDASE 7 570 IPR045087 -
Lal6g0219 570 PANTHER LACCASE 7 570 - -
Lal6g0219 570 TIGRFAM laccase: laccase 24 570 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lal6g0219 570 SUPERFAMILY Cupredoxins 153 346 IPR008972 -
Lal6g0219 570 Pfam Multicopper oxidase 159 309 IPR001117 -
Lal6g0219 570 CDD CuRO_3_LCC_plant 415 553 IPR034289 GO:0005507
Lal6g0219 570 Gene3D - 373 570 IPR008972 -
Lal6g0219 570 ProSitePatterns Multicopper oxidases signature 1. 528 548 IPR033138 -
Lal6g0219 570 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Lal6g0219 570 SUPERFAMILY Cupredoxins 352 570 IPR008972 -
Lal6g0219 570 SUPERFAMILY Cupredoxins 26 172 IPR008972 -
Lal6g0219 570 Gene3D - 14 145 IPR008972 -
Lal6g0219 570 Pfam Multicopper oxidase 33 146 IPR011707 GO:0005507
Lal6g0219 570 ProSitePatterns Multicopper oxidases signature 2. 533 544 IPR002355 GO:0005507
Lal6g0219 570 Gene3D - 157 348 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0219 Lal-Chr6 1456113 1458612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0219 K05909 - gmx:100796956 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0219 6 1456113 1458612 Lal18g1393 18 16198874 16201882 ECH
Lal6g0219 6 1456113 1458612 Lal6g0219 6 1456113 1458612 ECH
Lal18g1393 18 16198874 16201882 Lal6g0219 6 1456113 1458612 LSH
Lal21g1267 21 15888360 15894631 Lal6g0219 6 1456113 1458612 PCT
Lal18g1393 18 16198874 16201882 Lal6g0219 6 1456113 1458612 PCT
Lal6g0219 6 1456113 1458612 Lal21g1267 21 15888360 15894631 PCT
Lal6g0219 6 1456113 1458612 Lal18g1393 18 16198874 16201882 PCT