Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1393 ATGGAAGCTCTCAACACCTTCTTAGCCATTTTTGTTCTCCTAGCCTTAGCATTATTGTCCCCAGCAAATGGCAAAATTCAAGAGCATGAGTTTGTTGTTCAAGCAACTAGAGTGAAGAGGCTGTGCAACACTCATAGTGCCATCACCGTGAATGGACAATTCCCTGGCCCAACATTGGAAGTCAATAATGGAGACACTTTGGTCATCAAAGTCATTAATAAAGCACGTTATAATGTCACCATTCACTGGCATGGTATTAGACAAATCAGAACAGGATGGGCTGATGGGCCAGAATTTGTGACTCAGTGTCCCATTCGTCCTGGAGAAAGTTACACATATAGGTTCACAATTGAAGGACAAGAAGGCACACTTTGGTGGCATGCTCATAGCTCATGGCTAAGAGCCACTGTTTATGGAGCTTTAATCATTCACCCTAAGCAAGGAGAGACATACCCTTTCCCTAAGCCAAAGCGCCAGACACCCATTCTTCTAGGGGAATGGTGGGACGCAAATCCCATTAATGTTCTGAAGCAGGCCACACAAACAGGAGGAGCACCAAATGTGTCTGATGCTTACACTATCAATGGTCAACCTGGTGATCTTTATAAGTGCTCTACCCAAGGAACCACAATTGTTCCCATAGATTCAGGAGAGACCAACCTCATTCGAGTGATCAATGCTGCACTAAACCAACCCCTTTTCTTTACAATTGCAAACCATAAATTCACAGTGGTTGGAGCTGATGCATCATACCTTAAACCATTCACCACCACAGTCATAATGCTAGGACCTGGCCAAACCACTGATGTTCTAATAAAAGGTGACCAACCACCTTCAAGGTACTATATAGCAGCACGTGCTTACCAATCAGCACAAAATGCTGGATTTGATAACACAACTACCACTGCTATTCTTGAATACAAATCAGCACCTTGTCCTGCTAAGGGTGTAGCAGCAATTAAACCACTTATGCCTTCTCTACCTGCTTATAATGATACTAACACAGTCACTGCCTTTAGCAAAAGCCTTAGAAGTCCAAAAAGAGTTGAAGTTCCTACAGAAATAGATCAAAACCTTTTCTTCACTATTGGCTTAGGACTTAACAATTGTCCACCAAATTTCAACTCAAACCAATGCCAAGGACCTAATGGAACAAGATTCACTGCTAGTATGAACAATGTTTCTTTTGTTCTCCCAAGTAATATTTCAATCCTTCAAGCTCATCAACTTGGAGTTCAAGGAGTGTTCACCACTGATTTTCCAACAAACCCACCACTGCGATTCGATTATACTGGTAATGTAAGCCGTTCGTTATGGCAACCGATTTCAGGGACGAAAGTGACTAAGTTGAAATTTGGATCAAGGGTGGAGATTGTGTTGCAAGACACAAGCATTGTGACCCCGGAAAATCACCCAATTCATCTTCATGGCTATGATTTCTATGTTGTAGCTGAAGGGTTTGGAAACTTTGACCCTAAGAAAGATACTTCAAAATTCAACCTTGTTGATCCACCTCAAAGGAACACAGTTGCAGTGCCAGTGAATGGATGGGCAGTTATCAGATTTGTTGCTGATAACCCAGGTGCCTGGATTATGCATTGTCATTTGGATGTTCATATTGGATGGGGTTTGGCCACAGTGCTCTTGGTAGATAATGGAGAAGGACTATTGGAATCCTTAGAGACCCCACCAGAGGACTTGCCTCTGTGCTAG 1713 0.4267 MEALNTFLAIFVLLALALLSPANGKIQEHEFVVQATRVKRLCNTHSAITVNGQFPGPTLEVNNGDTLVIKVINKARYNVTIHWHGIRQIRTGWADGPEFVTQCPIRPGESYTYRFTIEGQEGTLWWHAHSSWLRATVYGALIIHPKQGETYPFPKPKRQTPILLGEWWDANPINVLKQATQTGGAPNVSDAYTINGQPGDLYKCSTQGTTIVPIDSGETNLIRVINAALNQPLFFTIANHKFTVVGADASYLKPFTTTVIMLGPGQTTDVLIKGDQPPSRYYIAARAYQSAQNAGFDNTTTTAILEYKSAPCPAKGVAAIKPLMPSLPAYNDTNTVTAFSKSLRSPKRVEVPTEIDQNLFFTIGLGLNNCPPNFNSNQCQGPNGTRFTASMNNVSFVLPSNISILQAHQLGVQGVFTTDFPTNPPLRFDYTGNVSRSLWQPISGTKVTKLKFGSRVEIVLQDTSIVTPENHPIHLHGYDFYVVAEGFGNFDPKKDTSKFNLVDPPQRNTVAVPVNGWAVIRFVADNPGAWIMHCHLDVHIGWGLATVLLVDNGEGLLESLETPPEDLPLC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1393 570 CDD CuRO_2_LCC_plant 161 307 IPR034285 -
Lal18g1393 570 Gene3D - 15 145 IPR008972 -
Lal18g1393 570 TIGRFAM laccase: laccase 25 570 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lal18g1393 570 PANTHER MULTI-COPPER OXIDASE 5 570 IPR045087 -
Lal18g1393 570 SUPERFAMILY Cupredoxins 153 346 IPR008972 -
Lal18g1393 570 Pfam Multicopper oxidase 159 309 IPR001117 -
Lal18g1393 570 Gene3D - 157 348 IPR008972 -
Lal18g1393 570 PANTHER LACCASE 5 570 - -
Lal18g1393 570 CDD CuRO_3_LCC_plant 415 553 IPR034289 GO:0005507
Lal18g1393 570 SUPERFAMILY Cupredoxins 25 172 IPR008972 -
Lal18g1393 570 SUPERFAMILY Cupredoxins 351 570 IPR008972 -
Lal18g1393 570 ProSitePatterns Multicopper oxidases signature 1. 528 548 IPR033138 -
Lal18g1393 570 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Lal18g1393 570 Pfam Multicopper oxidase 420 553 IPR011706 GO:0005507|GO:0016491
Lal18g1393 570 Pfam Multicopper oxidase 33 147 IPR011707 GO:0005507
Lal18g1393 570 Gene3D - 373 570 IPR008972 -
Lal18g1393 570 ProSitePatterns Multicopper oxidases signature 2. 533 544 IPR002355 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1393 Lal-Chr18 16198874 16201882 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1393 K05909 - gmx:100796956 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0219 6 1456113 1458612 Lal18g1393 18 16198874 16201882 ECH
Lal18g1393 18 16198874 16201882 Lal18g1393 18 16198874 16201882 ECH
Lal21g1267 21 15888360 15894631 Lal18g1393 18 16198874 16201882 LSH
Lal18g1393 18 16198874 16201882 Lal6g0219 6 1456113 1458612 LSH
Lal21g1267 21 15888360 15894631 Lal18g1393 18 16198874 16201882 PCT
Lal18g1393 18 16198874 16201882 Lal18g1393 18 16198874 16201882 PCT
Lal18g1393 18 16198874 16201882 Lal6g0219 6 1456113 1458612 PCT
Lal18g1393 18 16198874 16201882 Lal21g1267 21 15888360 15894631 PCT
Lal6g0219 6 1456113 1458612 Lal18g1393 18 16198874 16201882 PCT