Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1267 ATGGAACATATCAACTCCATTCTTACCAATGCCAAATACTTCTCATTCTTCTTAGCCATTTTTGCTCTCTTAGTTGCATTGTCTTCAGCAAACCCCAAAACTCACCATCATGAGTTCATTGTTGAAGCAACACCAGTGAAGAGGCTGTGCAAAACCCACAACACTATCACAGTGAATGGGCAATTCCCAGGTCCAACCTTGGAAATCAACAATGGAGACACTTTGGTTGTCAAAGTCATTAACAAAGCTCGTTACAATGTCACCATTCACTGGCATGGAATTAGACAAATGAGAACAGGTTGGGCAGATGGACCAGAATTTGTGACACAATGTCCCATTCGTCCCAAAGAGAGTTACACATATAAGTTCACAGTTGTAGGACAAGAGGGTACACTTTGGTGGCATGCTCATAGTTCATGGTTAAGGGCTACTGTTTATGGAGCCTTAATCATTCGTCCTAGGGAAGGAGACTCCTACCCTTTCCCTAAGCCAAACCGTGAGACACCAATTCTCCTAGGGGAATGGTGGGACACAAACCCCATTGATGTAATGAGAGAGGCCACAAGAACAGGAACAGCTCCAAATGTTTCTGATGCTTACACCATTAATGGTCAACCTGGTGATCTTTACAAATGTTCTAGCAAAGGCACAACAATTGTTCCAATAGATTCCGGTGAGACCAACCTCCTCCGAGTTATAAACTCAGCACTTAACCAACCTCTCTTTTTCACCGTCGCCAACCACAAACTCACGGTGGTTGGCGCGGATGCTTCATACCTTAAACCCTTCACCACGAAAGTCCTCATGCTAGGACCCGGTCAAACCACTGATGTTTTAATCAATGGTGACAATCCACCTTCACTTTACTACATTGCTTCACGTGCTTATCAATCTGCTCAAAACGCTGCGTTTGATAACACCACTACTACTGCAATTCTTCAATATAAATCAACTCATCATGTTTTGAATAATGTTAAAAAACCACTTATGCCATTACTTCCTCCTTATAATGACACTAATACAGTTACTGCATTCAGTAGAAGCTTTAGAAGTTCAAGAAATGTTGAGGTACCTACTGAGATCGATGAAAACCTGTTCTTCACTGTGGGACTAGGACTTAACAAGTGCCCTCCAAATTTTAGGGCAAGAAGGTGCCAAGGACCCAATGGAACACGCTTCACTGCAAGCATCAACAATGTATCTTTTGTACTCCCTAACAACATTTCCATTCTACAAGCACACCATTTTGGTATTCCAGGAGTCTTCACCACTGATTTCCCGGCCAAACCACCGTTGAAATTCGACTACACCGGTAACGTGAGCCGCTCCCTATGGCAACCCATTCCGGGGACTAAAGCTTACAAGTTGAAGTTTGGATCAAGAGTGCAAATTGTGTTGCAAGACACAAGTATAGTTACTTCTGAGAACCACCCAATTCACCTTCATGGTTATGATTTCTACATTGTTGCTGAGGGTTTTGGAAACTTCAATGCTAAGAAAGATAGTTCTAAATTCAACCTTGTTGATCCACCTCTACGAAACACAGTAGCTGTGCCTGTTAATGGTTGGGCTGTTATTCGATTTGTTGCTGATAATCCAGGTGCTTGGCTTTTGCACTGTCACTTGGATGTTCACATAAATTGGGGATTGGCCACAGTGCTATTGGTAGAGAATGGTGTTGGGAAATTTCAATCCATAGAGCCTCCTCCAAAGGATTTGCCTCTATGTTAG 1731 0.4275 MEHINSILTNAKYFSFFLAIFALLVALSSANPKTHHHEFIVEATPVKRLCKTHNTITVNGQFPGPTLEINNGDTLVVKVINKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPKESYTYKFTVVGQEGTLWWHAHSSWLRATVYGALIIRPREGDSYPFPKPNRETPILLGEWWDTNPIDVMREATRTGTAPNVSDAYTINGQPGDLYKCSSKGTTIVPIDSGETNLLRVINSALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLINGDNPPSLYYIASRAYQSAQNAAFDNTTTTAILQYKSTHHVLNNVKKPLMPLLPPYNDTNTVTAFSRSFRSSRNVEVPTEIDENLFFTVGLGLNKCPPNFRARRCQGPNGTRFTASINNVSFVLPNNISILQAHHFGIPGVFTTDFPAKPPLKFDYTGNVSRSLWQPIPGTKAYKLKFGSRVQIVLQDTSIVTSENHPIHLHGYDFYIVAEGFGNFNAKKDSSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLLHCHLDVHINWGLATVLLVENGVGKFQSIEPPPKDLPLC 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1267 576 CDD CuRO_2_LCC_plant 169 315 IPR034285 -
Lal21g1267 576 CDD CuRO_3_LCC_plant 421 559 IPR034289 GO:0005507
Lal21g1267 576 Pfam Multicopper oxidase 167 317 IPR001117 -
Lal21g1267 576 ProSitePatterns Multicopper oxidases signature 1. 534 554 IPR033138 -
Lal21g1267 576 Gene3D - 165 355 IPR008972 -
Lal21g1267 576 Pfam Multicopper oxidase 41 155 IPR011707 GO:0005507
Lal21g1267 576 PANTHER LACCASE 12 576 - -
Lal21g1267 576 SUPERFAMILY Cupredoxins 31 180 IPR008972 -
Lal21g1267 576 PANTHER MULTI-COPPER OXIDASE 12 576 IPR045087 -
Lal21g1267 576 ProSitePatterns Multicopper oxidases signature 2. 539 550 IPR002355 GO:0005507
Lal21g1267 576 Pfam Multicopper oxidase 426 558 IPR011706 GO:0005507|GO:0016491
Lal21g1267 576 Gene3D - 23 153 IPR008972 -
Lal21g1267 576 SUPERFAMILY Cupredoxins 161 354 IPR008972 -
Lal21g1267 576 CDD CuRO_1_LCC_plant 37 153 IPR034288 GO:0005507
Lal21g1267 576 SUPERFAMILY Cupredoxins 358 576 IPR008972 -
Lal21g1267 576 Gene3D - 380 576 IPR008972 -
Lal21g1267 576 TIGRFAM laccase: laccase 33 576 IPR017761 GO:0046274|GO:0048046|GO:0052716
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1267 Lal-Chr21 15888360 15894631 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1267 K05909 - gmx:100808948 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1267 21 15888360 15894631 Lal21g1267 21 15888360 15894631 ECH
Lal21g1267 21 15888360 15894631 Lal18g1393 18 16198874 16201882 LSH
Lal21g1267 21 15888360 15894631 Lal18g1393 18 16198874 16201882 PCT
Lal21g1267 21 15888360 15894631 Lal6g0219 6 1456113 1458612 PCT
Lal18g1393 18 16198874 16201882 Lal21g1267 21 15888360 15894631 PCT
Lal6g0219 6 1456113 1458612 Lal21g1267 21 15888360 15894631 PCT