Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1459 ATGGCTAAAACCTCCTTCAAGCTTGAACATCCTTTGGAAAGAAGACAAGCTGAGGCTTCCCGCATTAGAGAGAAGTATCCTGATAGAATACCCGTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCAGACATTGATAAGAAGAAATACCTTGTCCCAGCTGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGCAAAAGAATTAAGCTCAGTGCAGAGAAGGCTATTTTTGTTTTCATCAACAACACTCTACCTCCAACTGCTGCTTTGATGTCTGCTATTTATGAGGAAAATAAGGATCATGATGGCTTTCTTTACATTACTTACAGTGGGGAGAACACCTTTGGATCCCAATAG 360 0.4056 MAKTSFKLEHPLERRQAEASRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFINNTLPPTAALMSAIYEENKDHDGFLYITYSGENTFGSQ 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1459 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Lal5g1459 119 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Lal5g1459 119 MobiDBLite consensus disorder prediction 1 20 - -
Lal5g1459 119 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Lal5g1459 119 CDD Ubl_ATG8 12 114 - -
Lal5g1459 119 Gene3D - 1 117 - -
Lal5g1459 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1459 Lal-Chr5 17101456 17104611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1459 K08341 - gmx:100527884 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1459 5 17101456 17104611 Lal5g1459 5 17101456 17104611 ECH
Lal5g1459 5 17101456 17104611 Lal3g0278 3 1807349 1814845 ECH
Lal9g0373 9 2471607 2474534 Lal5g1459 5 17101456 17104611 ECH