Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0278 ATGCCTTCTTTCCGCAAATCTTCTTCCTTGGGAAGATCATCAAACCCTAATTTCAGAAGTTCTGAACTTTCTGATCCAATGAGGAGAAGTTTCACCGGGAACCCATTTTCCAAACCCTCCTCCCTCATCGCTAATTCTAGAACCTTCGTTCCCACCACTCCTGCCAATACTCCTACAGGTTCTCATATAAGAAACTCTGTTGGGGGAAGAAAAGTTCTAGAGTCCTTCTTCAGCGATCATGATGAGAACAAAGAAAATGGGAAAGGCCAGTTTCTGAAGGCTTCAAAGGCTCAATCATCAGCTGCATCTTCAAAAAGTGCAAAGAATTTTATGTCTCCAACAATTTCTGTTGCCTCTAAAGTCGCCATATCTCCAAAGAAAAAGGTCCTTGCTGACAGGAACGAGCCTTCTGCAACTTCTGTTCTTGCCACCGCAGAAGCCAAAAGCCCCATAATTCGTAAGGTAACTTTTGCGGAACCGCTACAGTGCAGCGATTTGAAATCAGAGAATGGTGTGGAGCAGAAAATGTTTGTAACTTCATCATTTGATGGACTCCCAACTGAGGAAATGCATTTTGCTACTTCCTTGAGTTGTGAAGAATTGAGTGGTGAAGCTGCTATCTTTGATATGAATTCTCCTTTCAAGTCAAAGAATGACACTGAGTTTTCTTTTCAAACTGTTGCTGATGAACCTGATTGTGTTATCCTTGACCCAAGTTTTAATCTTAGCCCTACACCTACTCCCCCTCCTCCTCTAGTTTCATCCACCATTTCCACCCTAGCTCCTCCTCATGCAGATCCTTTGTCACCTCCTTATGATCCTAAAACTAACTACCTCTCCCCCAGACCACAGTTCCTTCACTACAAACCAAAACCGCAAATGGAAAGAGAAGGGGAAAACTTAATGTTTGATAGCTTCTCTGATACAGAAGCTACTGAGGATACTCAATCTGAAGAAGGCTCGCAAAAATCAATGGAGGTTTCTTCAGATGAAGTAATTAAAGCAAAAGCTGGTATTTCTGAACTAAGTCCTGCTAAGACTTCAGATGAAGTAATTAAAGCAAAAGCTGGTATTTCTGAACTAAGTCCTGCTAAGACTTCATTGGCAGAGGAAACTGTTGAAGCAAGAGAGGTGCCTAAACCACACTCCTTTATGAAATCAACGACCTTTATTGTTCTACTTTTGCTCTTCTCAGCAGTTGCCATTATATCAGTTTCTATCACAAACTCCTCAGTGATGGATCATACTGTGTTTCAAGGCTTCTACAAGGTTTATGAATCGTCTAACTTGTCGGAGTATGCTAAGGCTAATTTTGATCAATACTCGCAGTTTGCAAAGGCAAAAATTGATGTGCCAGGTCTATATTTCCATACCTGGTATACTAAATCACTGTCTTTAGTTTCTGAGGTGATTTCAAATTTTAGAGGAGTGCACCATTTGGACTACCTAAACTTAACTGTATTTCAAGACTTCTACAAGGTTTATGAATTATCTGACTTGTCTAGGTATGCTAAGGCTAATTTTGGTCAATTCTCACAGTTTGCAAAGGCAAAATTTGATGTATCAGCTCGATATTTCTATACCTGGTATACTAAATTACTGTCTTCAATTTCTAAGGTGATTTTTAGTGTTAGAGAAGTGCACCATTTGGGCCGCCTACAATATTATAACTTAACTGTTTTGCAAGAGTCTAATGTGTTTGACCAGGAACCTATATTTGGCCCCGGTAAAATGGACATAGTTGAGATTGAGTTACCAGGACTAAACAATGAAGAAAGCGACACTGCTTTAGAGTCAGAGGATTACAAGTCAGAATTTGATCAGCAAGATGTGGGAGTAGCTACGCCCATCATCGCAAGTGTTCCAGAACTTGAGGAATCACTTGAAGGTGGCCAACCAGCTACTATGATAGAGTTATATCAGCCTTTGCAAGTGGCTGAAGTAAGTGAATTAAATCAATCATCAGAAGTAGTTGTTCTGTATGTTGATGTAAAGCCAAGTTTAGATGCAAAGGCTGCGGATATTCATAGTGAAGTGATTAAGATTGGAAATTTAGCAGCAACGATGACACAGGTATGCGACGTTGTTGACAATTACAGCAATGTTGCCCATGATGATCAGCCAAGTTTACATTCAGACATTGCTGAAATCGATACAGCAGAAGCCCGTGATAATAAAGACATGCAGTTGGCTGAAGCAGAGGGGGTAAATGCTGACAAATACAGTGATGTAGGCCTCAAGGACCAGCTTGGTTTAGATGCAAAGGCTGCTGATATTCATAATGAAGTGATTAAGATTGGAAATTTAGCAGCAACGACGACACAGGTATGCGACATTGTTGACAATTACAGCAATGTTGCCCATGATGATCAGCCAAGTTTACATTCAGACGTTGCTGAAATCAATACAGCAGAAGCCCGTGATAATAAAGACATGGAGTTGGCTGAAGCAGAGGGGGTAAATACTGACAAATACAGTGATGTAGGCCTCAAGGACCAGCTTGGTTTAAATTCAAACGTTGCCGAAATCCATACAGAAGATAGTGACATAGAGTTGACTGAAGCAGAGGGTGAATCTGCAAGCATAGATGCTACACTCGAAGATAATGAACAGAGATTAGAAACAACTGACTTTTTGTCACACCTGATGCTATACTTGCTGCTATGTGGAGGTACAGTTGCAGGTTTAGTTTTCAAGTGGTCTAGGAAAGTTATAAGCAAAAAGACAAAGGTTACTAGCTCTATTAACAAACCTGTGTTCGCTAAGGCGGCATTCTATTCTAAATCTTTACCAACACCGAAAGAATATCAGAGTTTTCTAGATAAACCGTCCCTCAGGAATGAGCCAACCGAAATTGACTTGCATGAAGAATTACACACTTCAGAAATGAGCAACATTCAGAAGAACTCATATAAGCAAAAGGTAGTTAAAGGGCCAACAGAAATTGACTTGCATGAAGAATTACACACTTCAGAAATGAGCAGCATTCAGAAGAACTCACATAAGCAAAAGGTACTGAAAGAGTTAAATGAAGTTAACAGAGTCGACAATAGGCCAACATCATCTTCATCCGAAGATTCAATTTCGCCATCCTATGGAAGCTTCACCACATACAGCAAAATTAAGATCAAGAGGGGGCATGGGGAAGAGGAGACAATTACTCCACTTAGGCGTTCAAGTAGGGTTAGAAGCAAAGTCACTTCTCTATTGAGCTTCACAGCGAAGCTTACTTGTGAAAGAGGCAATCCAAACCGTTTAGAGAAAAGATATATAGAGACTGAGCCTCTTTCGTTTTCCCTCAAATCATTGATCCTTTTGTTTTGGAGAACAATCACTCGTCAAATTCCATCATGGCTAAAACCTCCTTCAAGCTTCAACATCCTTTGGCGTAACTCTTTCTACATGTCAGAAAGAAGGCAAGCCGAGGCTTCCCGCATTAGAGAGAAGTATCCTGATAGAATACCTGTGATTGTGGAGAAAGCTGAGAGAAATGACATTCCAGACATTGATAAGAAGAAATACCTTGTCCCAGCTGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGCAAAAGAATTAAGCTCAGCGCAGAGAAGGCTATTTTTGTTTTCATCAATAATACTCTACCTCCAACCGCTGCAATGATGTCTGCTATTTATGAGGAAAATAAGGATCAGGATGGTTTTCTTTACATGACTTACAGTGGAGAGAACACTTTTGGATCCCAATAG 3732 0.4041 MPSFRKSSSLGRSSNPNFRSSELSDPMRRSFTGNPFSKPSSLIANSRTFVPTTPANTPTGSHIRNSVGGRKVLESFFSDHDENKENGKGQFLKASKAQSSAASSKSAKNFMSPTISVASKVAISPKKKVLADRNEPSATSVLATAEAKSPIIRKVTFAEPLQCSDLKSENGVEQKMFVTSSFDGLPTEEMHFATSLSCEELSGEAAIFDMNSPFKSKNDTEFSFQTVADEPDCVILDPSFNLSPTPTPPPPLVSSTISTLAPPHADPLSPPYDPKTNYLSPRPQFLHYKPKPQMEREGENLMFDSFSDTEATEDTQSEEGSQKSMEVSSDEVIKAKAGISELSPAKTSDEVIKAKAGISELSPAKTSLAEETVEAREVPKPHSFMKSTTFIVLLLLFSAVAIISVSITNSSVMDHTVFQGFYKVYESSNLSEYAKANFDQYSQFAKAKIDVPGLYFHTWYTKSLSLVSEVISNFRGVHHLDYLNLTVFQDFYKVYELSDLSRYAKANFGQFSQFAKAKFDVSARYFYTWYTKLLSSISKVIFSVREVHHLGRLQYYNLTVLQESNVFDQEPIFGPGKMDIVEIELPGLNNEESDTALESEDYKSEFDQQDVGVATPIIASVPELEESLEGGQPATMIELYQPLQVAEVSELNQSSEVVVLYVDVKPSLDAKAADIHSEVIKIGNLAATMTQVCDVVDNYSNVAHDDQPSLHSDIAEIDTAEARDNKDMQLAEAEGVNADKYSDVGLKDQLGLDAKAADIHNEVIKIGNLAATTTQVCDIVDNYSNVAHDDQPSLHSDVAEINTAEARDNKDMELAEAEGVNTDKYSDVGLKDQLGLNSNVAEIHTEDSDIELTEAEGESASIDATLEDNEQRLETTDFLSHLMLYLLLCGGTVAGLVFKWSRKVISKKTKVTSSINKPVFAKAAFYSKSLPTPKEYQSFLDKPSLRNEPTEIDLHEELHTSEMSNIQKNSYKQKVVKGPTEIDLHEELHTSEMSSIQKNSHKQKVLKELNEVNRVDNRPTSSSSEDSISPSYGSFTTYSKIKIKRGHGEEETITPLRRSSRVRSKVTSLLSFTAKLTCERGNPNRLEKRYIETEPLSFSLKSLILLFWRTITRQIPSWLKPPSSFNILWRNSFYMSERRQAEASRIREKYPDRIPVIVEKAERNDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFINNTLPPTAAMMSAIYEENKDQDGFLYMTYSGENTFGSQ 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0278 1243 SUPERFAMILY Ubiquitin-like 1135 1241 IPR029071 -
Lal3g0278 1243 Pfam Autophagy protein Atg8 ubiquitin like 1138 1241 IPR004241 -
Lal3g0278 1243 MobiDBLite consensus disorder prediction 1 68 - -
Lal3g0278 1243 MobiDBLite consensus disorder prediction 1008 1031 - -
Lal3g0278 1243 PANTHER TRANSMEMBRANE PROTEIN 4 487 - -
Lal3g0278 1243 PANTHER TRANSMEMBRANE PROTEIN 504 1068 - -
Lal3g0278 1243 PANTHER TRANSMEMBRANE PROTEIN 4 487 - -
Lal3g0278 1243 PANTHER TRANSMEMBRANE PROTEIN 504 1068 - -
Lal3g0278 1243 Gene3D - 1129 1241 - -
Lal3g0278 1243 MobiDBLite consensus disorder prediction 1015 1031 - -
Lal3g0278 1243 MobiDBLite consensus disorder prediction 1 64 - -
Lal3g0278 1243 CDD Ubl_ATG8 1137 1238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0278 Lal-Chr3 1807349 1814845 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0278 - - lang:109345336 1456.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0278 3 1807349 1814845 Lal3g0278 3 1807349 1814845 ECH
Lal5g1459 5 17101456 17104611 Lal3g0278 3 1807349 1814845 ECH
Lal9g0373 9 2471607 2474534 Lal3g0278 3 1807349 1814845 ECH