Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0307 ATGACAGGGACTGTGATAGTAAGCATGAACGGTGGTTGTGGTGGTGGAAAAGGAAGAAGAGTTACTAAAACAACTGAATATGAAGAAATAGAAGAAGAAGAAGAAGAACAGAATCAGGTTTCTCCGGTGGCGGTTTTATTAGCGGCGTTGAGAAAATCTATGGTGGCGTGTAGTGTGGAAAGTCCTAACGATGTAATCTCAACCGTTCATCATCATCATCATAAAATGGAGATTGGATGGCCCACAAATGTTAAACATGTTAGTCATGTTACTTTTGATCGTTTCAATGGGTTTTTGGGTCTTCCCATTGAGCTTCAATTGGATATACCCTCTCCAGTTCCTAGTGCTAGTGTAAGTGTGTTTGGGGTCTCAGCAGAATCAATGCAGTGTTCTTATGATTCAAAAGGAAACAGTGTCCCTACTATTCTGTTACTAATGCAAGAGAGATTATACTCACAGGAAGGACTAAAGGCTGAAGGTATATTTCGCATAAACCCGGAAAACGGTCAAGAAGAGCATTTGAGAGACCAATTGAATAAGGGCATTGTGCCAGATGACATTGATGTCCATTGCTTGGCAGGCCTAATTAAAGCATGGTTTCGAGAGCTTCCTTCGGGAGTTCTCGATGGACTTTCACCGGAGCAAGTTCTTCAATGCAACACTGAAGATGAATCTGTTCAACTTGTGAAGCAGCTAAAGCCAACTGAATCTGCCTTGCTTAACTGGGCCATTGATCTCATGACTGATGTTGTAGTAGAAGAGGAGTTTAACAAAATGGATGCAAGAAACATTGCAATGGTTTTCGCCCCGAATATGACTCAGATGTCTGATCCACTAACTGCGCTGATGCACGCGGTCCAAGTGATGAATTTATTGAAGACCCTGATACTGAAGACACTACGGGAACGTGAAGAAACAACGACATCGGGATATTCATCGATGTCATGCCATTCATCCGATCACCAATCCGAAGATGAGTATGACGACAGTCAGCAAGAAATGGATACTAGTGGTGAACTGAGAAGGAGCAAATCAGATTATGATGAAGATCATGTTCACTACAACCATAGCAGTGAAGAGGAAAGTGAGGCTGCATCTATAAGTGAGATTGAAGTATGCTTCTTGAAGACTTTGGATGAGAACACAACAGAATTCTCAGAAGAATCTGCAGGGTGTTTGCAAGAGGACCTTGCAGCCAGACATTTCTCAAGCAGCCATAACATGGACTCTGATATATCATTCACCGAAAATTCGTGCTCGAGTTCGTCTCGCCGAGATGAGTCTAGAGCAACTCCAGTTGATGTGACACCAAATGTTGGTGCAAAGTAG 1329 0.4259 MTGTVIVSMNGGCGGGKGRRVTKTTEYEEIEEEEEEQNQVSPVAVLLAALRKSMVACSVESPNDVISTVHHHHHKMEIGWPTNVKHVSHVTFDRFNGFLGLPIELQLDIPSPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQEGLKAEGIFRINPENGQEEHLRDQLNKGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEDESVQLVKQLKPTESALLNWAIDLMTDVVVEEEFNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLREREETTTSGYSSMSCHSSDHQSEDEYDDSQQEMDTSGELRRSKSDYDEDHVHYNHSSEEESEAASISEIEVCFLKTLDENTTEFSEESAGCLQEDLAARHFSSSHNMDSDISFTENSCSSSSRRDESRATPVDVTPNVGAK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0307 442 ProSiteProfiles CRIB domain profile. 78 91 IPR000095 -
Lal5g0307 442 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 433 - -
Lal5g0307 442 CDD CRIB 76 106 - -
Lal5g0307 442 MobiDBLite consensus disorder prediction 334 363 - -
Lal5g0307 442 MobiDBLite consensus disorder prediction 404 426 - -
Lal5g0307 442 Pfam P21-Rho-binding domain 77 110 IPR000095 -
Lal5g0307 442 Gene3D CRIB domain 72 107 IPR036936 -
Lal5g0307 442 MobiDBLite consensus disorder prediction 306 366 - -
Lal5g0307 442 SUPERFAMILY GTPase activation domain, GAP 119 297 IPR008936 GO:0007165
Lal5g0307 442 MobiDBLite consensus disorder prediction 404 442 - -
Lal5g0307 442 ProSiteProfiles Rho GTPase-activating proteins domain profile. 123 304 IPR000198 GO:0007165
Lal5g0307 442 SMART RhoGAP_3 137 300 IPR000198 GO:0007165
Lal5g0307 442 SMART PBD_5 78 112 IPR000095 -
Lal5g0307 442 Pfam RhoGAP domain 140 274 IPR000198 GO:0007165
Lal5g0307 442 Gene3D Rho GTPase activation protein 111 307 IPR008936 GO:0007165
Lal5g0307 442 PANTHER MKIAA1688 PROTEIN 1 433 IPR044785 GO:0005096
Lal5g0307 442 CDD RhoGAP 140 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0307 Lal-Chr5 2707093 2711162 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0307 - K20642 gmx:100812700 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0307 5 2707093 2711162 Lal5g0307 5 2707093 2711162 ECH
Lal5g0307 5 2707093 2711162 Lal18g0443 18 3678449 3681438 LSH
Lal5g0307 5 2707093 2711162 Lal24g0178 24 1308861 1312276 PCT
Lal24g0178 24 1308861 1312276 Lal5g0307 5 2707093 2711162 PCT