Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0443 ATGAATGGAAGAAGAGTTACCAAAACCACACAAGAGGTTTCACCAGTGACAGTTTTGTTAGAAGTTCTTAGAAAATCAATGGTGGTGTGTAGTGTGGAAAGTTCTGATGATCATCATAACATGGACATTGAGATTGGTTTGCCCACAAACGTTAAACATGTTAGTCATGTCACCTTTGATCGTTTCAATGGCTTTTTGGGTCTTCCCATTGACCTTCAGTTTCATATCCCCTCTCCAGTTCCAAGTGCTAGTGTAAGTGTGTTTGGTGTCTCAGCTGAATCCATGCAGTGTTCTTATGATTCAAAAGGAAATAGTGTTCCCACTATTCTCTTATTAATGCAGGAGCGGTTATATTCACAGGAAGGGCTAAAGGCTGAAGGTATATTTCGCATAAACCCAGAAAACAGTCAAGAGGGGCATGTGAGGGACCATTTGAATAAGGGCATTGTGCCAGATGAAATTGATGTCCATTGCTTAGCAGGCCTAATCAAAGCATGGTTTCGAGAGCTTCCTTCTGGGGTGCTAGATGGACTTTCACCTGAGCAAGTTCTTCAGTGCAACACAGAAGAAGAATTTGTTCAACTTGTGAAGTACCTAAAGCCAACTGAGTCTGCATTACTCAACTGGGCCATTGATCTCATGACTGATGTTGTAGTTGAAGAGGGGTGTAACAAAATGGATGCACGAAACATTGCGATGGTTTTCGCCCCAAATATGACTCAGATGTCTGATCCATTAACTGCATTGATGCACGCGGTTCAAGTGATGAACTTACTAAAGACCCTGATACTGATGACATTACGGGAACGTGAAGAAACAACGATATCAGGATCTTCATCCATGTCATGTCATTCATTAGATCACCGATCCGAAATGGATATTAGTAGTGAATTGAGAGGGACCAAGTTGGATTGTGATGATGATCATGCTCACTACAACAATTGCAGTGAAGATAAAGGGGATGCTGCATCTATAAGTGAGATAGAGGTATGCTTATCGAAGAGTTTGGATGAGAACACAAAAGAATTCTCAGAAGAACCTGCAGGGTATTTGCAAGAGGAGCTTGCAGCCAGCCCCAGGTATTGCTCTAACATGGAATCTGCTATATTACTTGCTGATATCAAAACTGGGAATTCCTGCCGAGTTTATCTTACGGAGACAATTTGA 1167 0.4173 MNGRRVTKTTQEVSPVTVLLEVLRKSMVVCSVESSDDHHNMDIEIGLPTNVKHVSHVTFDRFNGFLGLPIDLQFHIPSPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQEGLKAEGIFRINPENSQEGHVRDHLNKGIVPDEIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEEFVQLVKYLKPTESALLNWAIDLMTDVVVEEGCNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILMTLREREETTISGSSSMSCHSLDHRSEMDISSELRGTKLDCDDDHAHYNNCSEDKGDAASISEIEVCLSKSLDENTKEFSEEPAGYLQEELAASPRYCSNMESAILLADIKTGNSCRVYLTETI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0443 388 ProSiteProfiles CRIB domain profile. 45 58 IPR000095 -
Lal18g0443 388 ProSiteProfiles Rho GTPase-activating proteins domain profile. 90 274 IPR000198 GO:0007165
Lal18g0443 388 PANTHER MKIAA1688 PROTEIN 3 381 IPR044785 GO:0005096
Lal18g0443 388 CDD CRIB 43 73 - -
Lal18g0443 388 SMART PBD_5 45 79 IPR000095 -
Lal18g0443 388 Pfam RhoGAP domain 107 241 IPR000198 GO:0007165
Lal18g0443 388 SUPERFAMILY GTPase activation domain, GAP 86 264 IPR008936 GO:0007165
Lal18g0443 388 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 3 381 - -
Lal18g0443 388 Gene3D Rho GTPase activation protein 75 269 IPR008936 GO:0007165
Lal18g0443 388 Gene3D CRIB domain 40 74 IPR036936 -
Lal18g0443 388 CDD RhoGAP 107 263 - -
Lal18g0443 388 Pfam P21-Rho-binding domain 44 72 IPR000095 -
Lal18g0443 388 SMART RhoGAP_3 104 267 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0443 Lal-Chr18 3678449 3681438 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0443 - K20642 gmx:100812700 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0307 5 2707093 2711162 Lal18g0443 18 3678449 3681438 LSH
Lal18g0443 18 3678449 3681438 Lal24g0178 24 1308861 1312276 PCT
Lal24g0178 24 1308861 1312276 Lal18g0443 18 3678449 3681438 PCT