Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0253 ATGTCTTTGTTCCTTTCTTCACCATCTTCTCTCTTTTTCTTTCTTTTTCTTATCTCCAACACTTTCCTCCATTGTTACTCTTTCAATGACCCTGCCCATTATCATCATCCTTCACACCATCACCCTCCTCACTTTGCTTCTCATGACTACAAAGATGCACTCACCAAATCCATTATCTTTTTTGAAGGCCAAAGATCAGGGAAGCTTCCTCAGAATCAGAGAATTTCTTGGAGAAGTGATTCTGGTCTTTCTGATGGTTCAGCTATGAATGTTGATTTGGTTGGAGGGTACTATGATGCAGGGGACAATGTCAAATTTGGTTTTCCCATGGCCTTCACCACCACAATGCTTTCATGGAGTGTTATTGAGTTTGGAGGGATAATGAAAGGTGAATTGGAAAATGCTAGAGAGGCTATTCGTTGGGGTACTGATTATCTTCTCAAAGCAACTGCACATCCTGATACCATTTATGTTCAGGTGGGAGATGCTAAGAAGGACCATGGTTGTTGGGAGAGACCTGAAGACATGGATACCCCAAGAAATGTGTATAAGATAGACAAGAACACCCCTGGTTCAGAGGTGGCAGCAGAAACTGCTGCAGCTCTTGCAGCTGCTTCTTTGGTTTTCAAGAAAACTGACCCCACTTACTCCAAAACTTTAGCTAGGAGGGCTATTAGTGTTTTTCAGTTTGCTGATAAATACAGAGGATCCTACAGTGATGGCTTGAAACCCATTGTATGCCCCTTTTATTGCTCTTACTCAGGTTATGAGGATGAGCTTTTGTGGGGTGCTGCTTGGTTGCATAAAGCTACCAAAAATCAAATGTACCTAAACTACATTAAGGTTAATGGACAAACACTTGGGTCTGCAGAGTTTGACAATACATTTGGGTGGGATAACAAGCATGTTGGAGCAAGGATACTTCTTTCTAAGGCGTTTCTTGTTCAAAAGGTGAATACCCTTCATGACTATAAGGGTCATGCTGATAATTTTATTTGTTCTATTATTCCTGGGGCCTCTTTCTCTTCAACACAATATACCCCAGGTGGACTTTTATTCAAGATGAATGATAACAACATGCAATATGTAACATCAACATCATTTTTGCTCTTAACTTATGCTAAATATTTAACATCAGCTCATATGGTTGTGAACTGTGGTGGAACTATTATAACCCCAAAGAGCCTCAGGGCAATGGCCAAAAAACAGGTGGATTACTTGCTAGGAGACAATCCCTTAGAGATGTCCTACATGGTAGGGTATGGCCCAAAGTACCCACAAAGGATACACCATAGAGGCTCATCTCTACCTTCCATTTATGAACACCCTAGCAAGATCCAATGCTCAGAAGGATTCAATGTTATGAACTCACAATCCCCTAACCCCAACATTCTAGTTGGTGCCATAGTTGGAGGACCAGACCAATATGATAGGTTCCCTGATGAAAGGTCAGATTATGAACAATCAGAGCCAGCCACTTACCTGAATGCACCCTTAGTAGGAGCCCTTGGTTATCTTGCACACTCATTTGGCCAACTCTAG 1542 0.4163 MSLFLSSPSSLFFFLFLISNTFLHCYSFNDPAHYHHPSHHHPPHFASHDYKDALTKSIIFFEGQRSGKLPQNQRISWRSDSGLSDGSAMNVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGIMKGELENAREAIRWGTDYLLKATAHPDTIYVQVGDAKKDHGCWERPEDMDTPRNVYKIDKNTPGSEVAAETAAALAAASLVFKKTDPTYSKTLARRAISVFQFADKYRGSYSDGLKPIVCPFYCSYSGYEDELLWGAAWLHKATKNQMYLNYIKVNGQTLGSAEFDNTFGWDNKHVGARILLSKAFLVQKVNTLHDYKGHADNFICSIIPGASFSSTQYTPGGLLFKMNDNNMQYVTSTSFLLLTYAKYLTSAHMVVNCGGTIITPKSLRAMAKKQVDYLLGDNPLEMSYMVGYGPKYPQRIHHRGSSLPSIYEHPSKIQCSEGFNVMNSQSPNPNILVGAIVGGPDQYDRFPDERSDYEQSEPATYLNAPLVGALGYLAHSFGQL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0253 513 Pfam Glycosyl hydrolase family 9 50 503 IPR001701 GO:0004553|GO:0005975
Lal5g0253 513 SUPERFAMILY Six-hairpin glycosidases 47 511 IPR008928 GO:0005975
Lal5g0253 513 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 406 432 IPR018221 -
Lal5g0253 513 PANTHER ENDOGLUCANASE 17 22 513 - -
Lal5g0253 513 Gene3D - 45 513 IPR012341 GO:0005975
Lal5g0253 513 PANTHER ENDO-1,4-BETA-GLUCANASE 22 513 - -
Lal5g0253 513 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 479 497 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0253 Lal-Chr5 2217276 2223352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0253 1 509 Glycoside Hydrolase AT1G02800 72.798 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0253 K01179 - gmx:100777718 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0253 5 2217276 2223352 Lal5g0253 5 2217276 2223352 ECH
Lal5g0253 5 2217276 2223352 Lal12g0498 12 3566721 3569881 PCT
Lal5g0253 5 2217276 2223352 Lal13g0500 13 3234536 3237525 PCT
Lal12g0498 12 3566721 3569881 Lal5g0253 5 2217276 2223352 PCT
Lal13g0500 13 3234536 3237525 Lal5g0253 5 2217276 2223352 PCT