Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0498 ATGATTTTCTCTCTTTCCTTCATTCCTCTGTTCCTTCTTTTATCTACTCTTCTGCTTCTATATTGTGATGCTTCCCCACTTCACTATCACAATCACCCTTTACACCATCACCATTCTCATTTTGCAACCCATAACTATAGAGATGCTCTCTCCAAATCTATACTCTTCTTTGAAGGCCAGAGATCAGGGAAACTCCTTTCTAACCACAGAATGTCTTGGAGAAAGGACTCTGCTCTCTCTGATGGCTCTGCCATGCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTTAAGTTTGGTTTTCCAATGGCTTTCACTACAACTATGCTTTCTTGGAGTGTTATTGAGTTTGGTGGGCTAATGAAAAGTGAGTTGCAGAATGCTAGGGAAGCTATTCGGTGGGGTACTGATTATCTTCTCAAAGCTACTGCACATCCAAACATCATTTATGTTCAGGTGGGAGATGCTACAAAGGACCATGCTTGTTGGGAGAGACCTGAGGACATGGACACACCAAGAAGTGTGTTCAAGATTGATGCAAACAACCCTGGTTCAGAAGTGGCTGCGGAAACTGCTGCAGCTCTTGCATCTGCTTCTCTTGTTTTCAGAAGAACTGACCCTACATACTCCAGAATTTTACTCAGAAGGGCTATCAGGGTATTCCAGTTTGCTGATAAATACAGGGGAGCCTACAGCAATGCCTTGAAGCATGTTGTGTGCCCCTTCTACTGTGATTACTCTGGTTATCTGGATGAGTTGTTGTGGGGTGCTGCTTGGCTGCATAAGGCTACTAAGAATCCAGTGTACTTAAACTATATTCAAGTCAATGGACACATCCTTGGTGCTGCTCAGTTTGATAATACCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTTCTTTCCAAGGAATTCCTTATTCAAAAGGTACAATCCCTTCATGATTATAAGGGTCATGCAGACAATTTCATTTGTTCTCTAATTCCTGGAGCATCTTTCTCTTCTTCCCAATATACCCCTGGTGGATTATTGTTCAAGATGAATGATAGCAACATGCAGTATGTAACATCCACCTCCTTCCTATTGTTAACCTATGCCAAATACTTAACCATGTCCCATATGGTTGTAAACTGTGGTGGAACCACAATAACCCCAAAGAGGCTCAAGACAATAGCCAAGAAACAGGTGGATTACTTGCTAGGAGACAATCCCTTAAAAATGTCCTACATGGTGGGGTATGGTCCAAGGTACCCAAGAAGGATACACCATAGGGGCTCATCTCTTCCGTCCATTGCAGTGCACCCTAATAAGATCCAATGTTCAGCAGGCTTCAATGTGATGAAGTCACAATCCCCCAATCCCAATGTTCTAGTGGGTGCAGTTGTTGGTGGGCCAGATCTTCATGATAGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAGCCAGCTACATATATTAACGCACCCCTTGTGGGATCATTGGCTTATCTTGCACACTCATTTGGTCAGCTATAA 1530 0.432 MIFSLSFIPLFLLLSTLLLLYCDASPLHYHNHPLHHHHSHFATHNYRDALSKSILFFEGQRSGKLLSNHRMSWRKDSALSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKSELQNAREAIRWGTDYLLKATAHPNIIYVQVGDATKDHACWERPEDMDTPRSVFKIDANNPGSEVAAETAAALASASLVFRRTDPTYSRILLRRAIRVFQFADKYRGAYSNALKHVVCPFYCDYSGYLDELLWGAAWLHKATKNPVYLNYIQVNGHILGAAQFDNTFGWDNKHVGARILLSKEFLIQKVQSLHDYKGHADNFICSLIPGASFSSSQYTPGGLLFKMNDSNMQYVTSTSFLLLTYAKYLTMSHMVVNCGGTTITPKRLKTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPNKIQCSAGFNVMKSQSPNPNVLVGAVVGGPDLHDRFPDERSDYEQSEPATYINAPLVGSLAYLAHSFGQL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0498 509 SUPERFAMILY Six-hairpin glycosidases 43 507 IPR008928 GO:0005975
Lal12g0498 509 Pfam Glycosyl hydrolase family 9 46 498 IPR001701 GO:0004553|GO:0005975
Lal12g0498 509 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 475 493 IPR033126 -
Lal12g0498 509 Gene3D - 41 509 IPR012341 GO:0005975
Lal12g0498 509 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 402 428 IPR018221 -
Lal12g0498 509 PANTHER ENDO-1,4-BETA-GLUCANASE 15 509 - -
Lal12g0498 509 PANTHER ENDOGLUCANASE 17 15 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0498 Lal-Chr12 3566721 3569881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0498 1 505 Glycoside Hydrolase AT1G02800 74.257 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0498 K01179 - gmx:100789144 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0498 12 3566721 3569881 Lal12g0498 12 3566721 3569881 ECH
Lal12g0498 12 3566721 3569881 Lal13g0500 13 3234536 3237525 LSH
Lal5g0253 5 2217276 2223352 Lal12g0498 12 3566721 3569881 PCT
Lal12g0498 12 3566721 3569881 Lal5g0253 5 2217276 2223352 PCT