Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0500 ATGACTTTCTCTTTTTTCTTCACTCTTCTCCTCTCTATTTTCTTCACTCTTCTTCTTCATTGTAATGCATTCCCAACCCATTATCACTTTGCCACTCATAACTACAAAGATGCTCTCACAAAATCTATCATCTTCTTTGAAGGCCAGAGATCAGGGAAGCTTCCTTCTAATCAGAGAATGTCTTGGAGGAAGGACTCTGCTCTATATGATGGCTCAACCATGCATGTAGATTTGGTTGGAGGGTACTATGATGCTGGAGATAATGTCAAGTTTGGTTTTCCTATGGCCTTTACTACCACTATGCTTTCTTGGAGTGTTATTGAGTTTGGTGGGTTGATGAAAAATGAGTTGCAGAATGCTAGAGAGGCTATTCGCTGGGGTACTGATTATCTTCTCAAAGCCACTGCTCATCCCAACACCATTTATGTTCAGGTGGGAGATGCTACAAAGGACCATGCTTGTTGGGAGAGACCAGAGGACATGGACACTCCAAGAAGTGTGTTCAAGATAGATGCAAACAACCCTGGTTCAGAAGTGGCTGCTGAAACCGCTGCAGCTCTTGCAGCCGCTTCTCTTGTTTTCAGAAGAAGTGATCCCACTTACTCCAAACTTTTACTCAGAAGGGCTATCAGGGTCTTCCAGTTTGCTGATAAATACAGAGGAGCCTACAGCAATGTCTTGAAGCCTATTGTTTGTCCCTTTTATTGTGATTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCTTGGCTGCATAAGGCTACCAAAAATCCAATGTACCTAAACTACATTCAAGTTAATGGAAAGATCCTTGGAGCTGCTGAGTTTGACAATACCTTTGGTTGGGATAACAAGCATGTTGGAGCAAGGATACTACTTTCCAAGGAATTCCTTATTCAAAAGGTACAATCCCTGCATGATTACAAGGGTCATGCAGACAATTTCATTTGTTCTCTAATTCCTGGGACATCTTTTTCTTCTGCACAATATACCCCTGGTGGACTATTGTTCAAGATGAGTGATAGCAACATGCAGTATGTAACATCCACTTCCTTCCTATTGTTAACATATGCCAAATATTTGACCACATCCCATATGAAAGTAAACTGTGGTGGAACCACAATAACACCAAGGATGCTAAGAACAATTGCCAAGAAACAGGTGGATTACTTGCTAGGAGACAATCCCTTGAGAATGTCTTACATGGTGGGGTATGGTCCAAGGTACCCAAGAAGGATACACCACAGGGGTTCATCTCTACCGTCCATTGCAGTACACCCTGAGAAGATCCAATGTTCAGCAGGCTTTAGTGTAATGAACTCACAATCCCCCAATCCTAATATTCTAGTTGGTGCAGTTGTTGGTGGACCTGACCTGCATGATAGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAGCCAGCAACTTATATTAATGCACCCCTTGTGGGATCATTGACTTATCTTGCACACTCATTTGGTCAACTATAA 1497 0.4255 MTFSFFFTLLLSIFFTLLLHCNAFPTHYHFATHNYKDALTKSIIFFEGQRSGKLPSNQRMSWRKDSALYDGSTMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKNELQNAREAIRWGTDYLLKATAHPNTIYVQVGDATKDHACWERPEDMDTPRSVFKIDANNPGSEVAAETAAALAAASLVFRRSDPTYSKLLLRRAIRVFQFADKYRGAYSNVLKPIVCPFYCDYSGYQDELLWGAAWLHKATKNPMYLNYIQVNGKILGAAEFDNTFGWDNKHVGARILLSKEFLIQKVQSLHDYKGHADNFICSLIPGTSFSSAQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTTSHMKVNCGGTTITPRMLRTIAKKQVDYLLGDNPLRMSYMVGYGPRYPRRIHHRGSSLPSIAVHPEKIQCSAGFSVMNSQSPNPNILVGAVVGGPDLHDRFPDERSDYEQSEPATYINAPLVGSLTYLAHSFGQL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0500 498 PANTHER ENDO-1,4-BETA-GLUCANASE 4 498 - -
Lal13g0500 498 Gene3D - 30 498 IPR012341 GO:0005975
Lal13g0500 498 SUPERFAMILY Six-hairpin glycosidases 32 496 IPR008928 GO:0005975
Lal13g0500 498 Pfam Glycosyl hydrolase family 9 35 487 IPR001701 GO:0004553|GO:0005975
Lal13g0500 498 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Lal13g0500 498 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 464 482 IPR033126 -
Lal13g0500 498 PANTHER ENDOGLUCANASE 17 4 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0500 Lal-Chr13 3234536 3237525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0500 7 494 Glycoside Hydrolase AT1G02800 75.410 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0500 K01179 - gmx:100789144 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0500 13 3234536 3237525 Lal13g0500 13 3234536 3237525 ECH
Lal12g0498 12 3566721 3569881 Lal13g0500 13 3234536 3237525 LSH
Lal5g0253 5 2217276 2223352 Lal13g0500 13 3234536 3237525 PCT
Lal13g0500 13 3234536 3237525 Lal5g0253 5 2217276 2223352 PCT