Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal5g0220 | ATGGGTCTTTCATTCACGAAGTTGTTCAGTCGTTTGTTTGCGAAGAAAGAGATGCGTATACTTATGGTGGGTCTTGATGCTGCTGGTAAAACCACCATTCTTTATAAGCTCAAGCTTGGAGAAATTGTCACCACCATCCCTACTATTGTGGAGAGAGATTGGTTGGCGTGGCGTAGCGTGAATCGCCAATTTGGAGGGGACGAAATAAGGTTTAATGTTGAAACTGTGGAATACAAGAACATCAGCTTCACTGTCTGGGATGTTGGTGGCCAGGACAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAATACGCAAGGACTTATTTTTGTGATTGATAGCAATGATCAGGACCGTGTTGTTGAAGCTAGAGATGAACTGCACAGGATGTTGAATGAGGATGAGTTGAGAGATGCTGTGCTTCTAGTTTTTGCAAACAAACAAGATCTTCCTAATGCTATGAATGCTGCTGAAATAACTGATAAGCTTGGTCTTCATTCACTTCGTCAGCGTCACTGGTATATCCAGAGCACCTGTGCCACATCTGGTGAAGGACTTTACGAAGGACTTGACTGGCTTTCCAACAACATCGCAAGCAAGGCATAG | 606 | 0.4356 | MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIVERDWLAWRSVNRQFGGDEIRFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDQDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal5g0220 | 201 | Gene3D | - | 3 | 198 | IPR027417 | - | |
| Lal5g0220 | 201 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 14 | 198 | IPR027417 | - | |
| Lal5g0220 | 201 | SMART | sar_sub_1 | 1 | 197 | IPR006689 | GO:0003924|GO:0005525 | |
| Lal5g0220 | 201 | CDD | Arf1_5_like | 18 | 196 | IPR045872 | GO:0003924 | |
| Lal5g0220 | 201 | ProSiteProfiles | small GTPase Arf family profile. | 11 | 197 | - | - | |
| Lal5g0220 | 201 | PANTHER | ADP-RIBOSYLATION FACTOR A1F | 69 | 201 | - | - | |
| Lal5g0220 | 201 | PANTHER | ADP-RIBOSYLATION FACTOR A1F | 1 | 49 | - | - | |
| Lal5g0220 | 201 | Pfam | ADP-ribosylation factor family | 69 | 197 | IPR006689 | GO:0003924|GO:0005525 | |
| Lal5g0220 | 201 | Pfam | ADP-ribosylation factor family | 5 | 49 | IPR006689 | GO:0003924|GO:0005525 | |
| Lal5g0220 | 201 | SMART | arf_sub_2 | 1 | 201 | - | - | |
| Lal5g0220 | 201 | TIGRFAM | small_GTP: small GTP-binding protein domain | 16 | 177 | IPR005225 | GO:0005525 | |
| Lal5g0220 | 201 | PANTHER | ADP RIBOSYLATION FACTOR-RELATED | 69 | 201 | IPR024156 | GO:0005525 | |
| Lal5g0220 | 201 | PANTHER | ADP RIBOSYLATION FACTOR-RELATED | 1 | 49 | IPR024156 | GO:0005525 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal5g0220 | Lal-Chr5 | 1885475 | 1888406 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal5g0220 | K07937 | - | thj:104823947 | 348.591 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal5g0220 | 5 | 1885475 | 1888406 | Lal5g0220 | 5 | 1885475 | 1888406 | ECH | |
| Lal5g0220 | 5 | 1885475 | 1888406 | Lal18g0409 | 18 | 3458958 | 3462190 | ECH | |
| Lal5g0220 | 5 | 1885475 | 1888406 | Lal18g0409 | 18 | 3458958 | 3462190 | LSH | |
| Lal5g0220 | 5 | 1885475 | 1888406 | Lal24g0439 | 24 | 3102064 | 3104906 | PCT | |
| Lal24g0439 | 24 | 3102064 | 3104906 | Lal5g0220 | 5 | 1885475 | 1888406 | PCT |