Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0409 ATGTGGAAAGAACAGTTATTGATGGTTCCACAAATTGGAGAAAGAGCAGTTTCTTCTTTTTCTTCCAAACCAAACAACAACAGATCTCAGTTGAAAATGGGTCTATCATTCACAAAGCTGTTCAGTCGTCTATTTGCGAAGAAAGAGATGCGTATACTTATGGTAGGTCTTGATGCTGCTGGTAAGACCACCATTCTTTATAAGCTTAAGCTTGGTGAAATTGTCACTACCATTCCAACCATTGGGTTTAATGTGGAAACTGTGGAATACAAGAACATCAGCTTCACCGTCTGGGATGTGGGTGGCCAGGACAAGATTCGTCCTTTGTGGAGGCATTACTTCCAAAATACACAAGGACTTATATTTGTGATTGACAGCAACGATAGAGATCGTGTTGTTGAAGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGAGATGCTGTGCTTCTGGTTTTTGCAAACAAACAAGATCTTCCTAATGCTATGAATGCTGCTGAAATAACTGATAAGCTTGGTCTTCATTCGCTTCGTCAGCGTCACTGGTATATCCAGAGCACCTGTGCCACATCTGGTGAAGGACTTTACGAAGGACTTGACTGGCTTTCAAACAACATAGCAAACAAGGCATAG 642 0.4174 MWKEQLLMVPQIGERAVSSFSSKPNNNRSQLKMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0409 213 CDD Arf1_5_like 50 208 IPR045872 GO:0003924
Lal18g0409 213 Pfam ADP-ribosylation factor family 37 209 IPR006689 GO:0003924|GO:0005525
Lal18g0409 213 TIGRFAM small_GTP: small GTP-binding protein domain 48 188 IPR005225 GO:0005525
Lal18g0409 213 PRINTS GTP-binding SAR1 protein signature 51 74 IPR006689 GO:0003924|GO:0005525
Lal18g0409 213 PRINTS GTP-binding SAR1 protein signature 79 103 IPR006689 GO:0003924|GO:0005525
Lal18g0409 213 PRINTS GTP-binding SAR1 protein signature 106 131 IPR006689 GO:0003924|GO:0005525
Lal18g0409 213 PRINTS GTP-binding SAR1 protein signature 151 172 IPR006689 GO:0003924|GO:0005525
Lal18g0409 213 PANTHER ADP RIBOSYLATION FACTOR-RELATED 33 213 IPR024156 GO:0005525
Lal18g0409 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 211 IPR027417 -
Lal18g0409 213 SMART rab_sub_5 50 212 - -
Lal18g0409 213 Gene3D - 36 213 IPR027417 -
Lal18g0409 213 ProSiteProfiles small GTPase Arf family profile. 43 209 - -
Lal18g0409 213 PANTHER ADP-RIBOSYLATION FACTOR A1F 33 213 - -
Lal18g0409 213 SMART arf_sub_2 33 213 - -
Lal18g0409 213 SMART sar_sub_1 33 209 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0409 Lal-Chr18 3458958 3462190 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0409 K07937 - twl:119982669 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0409 18 3458958 3462190 Lal18g0409 18 3458958 3462190 ECH
Lal5g0220 5 1885475 1888406 Lal18g0409 18 3458958 3462190 ECH
Lal5g0220 5 1885475 1888406 Lal18g0409 18 3458958 3462190 LSH
Lal18g0409 18 3458958 3462190 Lal24g0439 24 3102064 3104906 PCT
Lal24g0439 24 3102064 3104906 Lal18g0409 18 3458958 3462190 PCT