Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0439 ATGGGGCTATCTTTCACAAAGCTATTCAGCCGGTTATTTGCGAAGAAAGAGATGCGTATACTTATGGTGGGTCTCGATGCGGCTGGTAAGACCACCATTCTGTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCCACCATTGGGTTTAATGTGGAAACTGTTGAATACAAGAACATCAGCTTTACTGTCTGGGATGTCGGGGGTCAGGACAAGATCCGTCCTTTGTGGAGACATTACTTCCAAAACACACAAGGACTTATTTTTGTGGTTGACAGTAACGACAGGGACCGTGCTGTTGAAGCTAGAGATGAACTGCATAGGATGTTGAATGAGGATGAGTTGAGAGATGCTGTTCTCCTAGTTTTCGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCATTCTCTTCGTCAGCGTCACTGGTATATCCAGAGCACTTGTGCCACATCTGGTGAAGGGCTTTATGAAGGACTGGACTGGCTCTCAAACAACATTGCAAACAAGGTTAGTATACAATTATTTGGAAAAGCTAGAGATTTACAGACATGGGTGCAAGAAATTGAGTTTACTGTAGCCACTACCATCTCCTGTTATTTTGGCCCTGCATAG 645 0.4388 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRAVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVSIQLFGKARDLQTWVQEIEFTVATTISCYFGPA 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0439 214 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Lal24g0439 214 SMART arf_sub_2 1 181 - -
Lal24g0439 214 SMART rab_sub_5 18 184 - -
Lal24g0439 214 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Lal24g0439 214 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Lal24g0439 214 TIGRFAM small_GTP: small GTP-binding protein domain 16 156 IPR005225 GO:0005525
Lal24g0439 214 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 180 - -
Lal24g0439 214 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Lal24g0439 214 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Lal24g0439 214 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Lal24g0439 214 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Lal24g0439 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
Lal24g0439 214 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 180 IPR024156 GO:0005525
Lal24g0439 214 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Lal24g0439 214 Gene3D - 4 185 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0439 Lal-Chr24 3102064 3104906 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0439 K07937 - dcr:108223243 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0439 24 3102064 3104906 Lal24g0439 24 3102064 3104906 ECH
Lal5g0220 5 1885475 1888406 Lal24g0439 24 3102064 3104906 PCT
Lal18g0409 18 3458958 3462190 Lal24g0439 24 3102064 3104906 PCT
Lal24g0439 24 3102064 3104906 Lal5g0220 5 1885475 1888406 PCT
Lal24g0439 24 3102064 3104906 Lal18g0409 18 3458958 3462190 PCT