Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0187 ATGGGGTACAAGCAATTGTGCGCGACCTTCTGTTTATTGGCTTTAACATGTTCCCTACTTCCTTCTTTCTCAAATGGACTTTTGAGAGTTGGTTTAAATAAGAAACCTCTTGATCTTCCGAGTTTTCATGCCGCTAAAAAGGCAAGAGAAGATCTAAAGTTACGAAGACCAATTATGGGCGCATATGATAAGTATATTGGTACATCGAAGGGCGAAGATATAGTACCGTTGACTAATTATTTGGATGCTCAGTATTTTGGTGAGGTTGGAATTGGTACACCTCCACAGAAATTTACCGTCATATTCGATACTGGTAGTTCCAACCTTTGGGTTCCATCATCTAAGTGCTATTTTTCGGCTGCTTGCTATACCCATAATTGGTACAAGGCAAAGAAATCCAAATCATATACCAAAAATGGAACATCGTGTAAAATAAGCTATGGCTCTGGATCAATATCCGGTTTCTTCAGTCAAGATCATGTTAAAGTTGGCAATGTTGTTGTCAAGAATCAGGATTTCATCGAGGCTACCCGAGAAGGAAGTATTTCCTTTTTGGCCGGGAAGTTTGATGGAATACTTGGGCTTGGCTTTCAGGAGATCTCAGTTGAAGATGCTGTGCCAGTATGGTATAATCTTGTGGAACAAAATCTTGTAAGTCAGAAGGTGTTCTCTTTTTGGCTCAACGGGGATCCAAATGCGAAGAGTGGTGGTGAACTAGTATTCGGTGGTGTTGATTCAAAGCACTTCAAAGGAGAACACACCTATGTTCCGGTTACAAGAAGAGGTTACTGGCAGATTGAAATGGGAGATTTTCTCATTGGAGGTCTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTTCTGTCATTGCTGAAATCAACCATGCTATTGGAGCCGAGGGAGTTCTCAGCGTAGAATGTAAGGATGTCGTTTCTCAATACGGAGAGTTGATATGGGATCTCTTAGTATCAGGGGTGAATCCTGCTGACGTATGTTCGCAAGTTGGATTATGCACTTTCAAGAAGGATCTATCTAAGAGTGCTGGAATTGAGATGGTAACCGAAAAGGAGACAGAGTCGAAAACTAGAGGAGATACTCCGTTGTGTTCATCTTGTCAAATGCTTGTGATTTGGATCCAGAATCAACTAAAGCAAAAGAACACTAAGGAAAGAGTGTTCAGCTATGTGAACCAACTATGTGAAAGCCTGCCGAGTCCAGCTGGAGAGTCGGTGATAAGCTGCGATAGTCTTTCTCGGATGCCAAACATTACATTCACTATTGGAGATAAACCTTTCGTCCTTACACCAGATCAGTATATTCTGAGAACTGGAGAAGGCATCACAGAAGTTTGCCTTAGTGGGTTTATTGCTCTTGATGTTCCTGCTCCAAGGGGCCCACTCTGGATTCTTGGTGATATTTTCATGAGGGTATATCACACAGTTTTTGACTATGGGAATGCCCAAGTTGGTTTTGCCCTAGCTGCCTAA 1527 0.4224 MGYKQLCATFCLLALTCSLLPSFSNGLLRVGLNKKPLDLPSFHAAKKAREDLKLRRPIMGAYDKYIGTSKGEDIVPLTNYLDAQYFGEVGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSAACYTHNWYKAKKSKSYTKNGTSCKISYGSGSISGFFSQDHVKVGNVVVKNQDFIEATREGSISFLAGKFDGILGLGFQEISVEDAVPVWYNLVEQNLVSQKVFSFWLNGDPNAKSGGELVFGGVDSKHFKGEHTYVPVTRRGYWQIEMGDFLIGGLSTGVCEGGCAAIVDSGTSLLAGPTSVIAEINHAIGAEGVLSVECKDVVSQYGELIWDLLVSGVNPADVCSQVGLCTFKKDLSKSAGIEMVTEKETESKTRGDTPLCSSCQMLVIWIQNQLKQKNTKERVFSYVNQLCESLPSPAGESVISCDSLSRMPNITFTIGDKPFVLTPDQYILRTGEGITEVCLSGFIALDVPAPRGPLWILGDIFMRVYHTVFDYGNAQVGFALAA 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0187 508 Gene3D - 315 417 - -
Lal5g0187 508 Pfam Saposin-like type B, region 1 380 417 IPR007856 GO:0006629
Lal5g0187 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Lal5g0187 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Lal5g0187 508 SUPERFAMILY Acid proteases 9 505 IPR021109 -
Lal5g0187 508 SMART sapb_4 279 351 IPR008139 -
Lal5g0187 508 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Lal5g0187 508 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Lal5g0187 508 ProSiteProfiles Peptidase family A1 domain profile. 85 505 IPR033121 -
Lal5g0187 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 5 507 IPR001461 GO:0004190|GO:0006508
Lal5g0187 508 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Lal5g0187 508 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Lal5g0187 508 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Lal5g0187 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190|GO:0006508
Lal5g0187 508 SUPERFAMILY Saposin 316 417 IPR011001 -
Lal5g0187 508 Gene3D Acid Proteases 28 243 IPR021109 -
Lal5g0187 508 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 5 507 - -
Lal5g0187 508 Gene3D Acid Proteases 244 508 IPR021109 -
Lal5g0187 508 Pfam Eukaryotic aspartyl protease 84 506 IPR033121 -
Lal5g0187 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0187 Lal-Chr5 1622831 1628804 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0187 K08245 - gmx:548009 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0187 5 1622831 1628804 Lal5g0187 5 1622831 1628804 ECH
Lal3g1422 3 20124345 20129706 Lal5g0187 5 1622831 1628804 LSH
Lal5g0187 5 1622831 1628804 Lal13g0592 13 3861934 3866419 PCT
Lal13g0592 13 3861934 3866419 Lal5g0187 5 1622831 1628804 PCT