Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0592 ATGGAGAACAAGTATTTGTGGGTGGCTTTCTGTTTGTGGGCTTTAATATGCTCATTTCTTCCTTCTTTCTCATATGGACTTATGAGAATTGGTTTGAAGAAGAGGTCTATAGATCTTCAAAGCATTAGAGCTAGCAGATCGGCAAGCGCGGAGCAAAAATTAGGCAGAGCAATTGTCGGTGCATACGATCAGTATATTGGCGAGCCACAAGATGATGGTATAGTACCTTTGAAGAATTTTTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCCCCACAGACCTTTAATGTTATATTTGATACTGGTAGTTCCAACCTCTGGGTTCCATCATCAAAGTGCTATTTTTCTCTTGCCTGCTACTCTCATCACTGGTACAAGGCAAAGAAATCCAAAACATATACCAAAAATGGAACATCATGCAAAATTAGTTATGGATCAGGAGCGATATCTGGCTTTTTCAGTCAAGATAATGTTAAAGTTGGTAATGTTATTGTGAAGAATCAAGATTTCATTGAGGCCACCCGAGAAGGAAGTCTTTCCTTTGTGCTAGCGAAATTTGACGGATTATTTGGGCTTGGGTTTCAGGAGATCTCAGTGGAAAATGCTGTGCCAGTATGGTACAGTATGGTGCAGCAACATCTTATAAATGAGCAGGTCTTCTCTTTCTGGCTCAATGGGGATCCAAACGCCAAGAACGGCGGTGAATTAGTTTTTGGAGGTGTTGATCCAAAACATTTCAAAGGAAACCACTCTTATGTTCCAGTTACTAAAAAGGGCTACTGGCAGATTGAAATTGGTGATTTTTTCATTGGAGGTCTCTCAACAGGTGTTTGTGAGGGTGGATGTGCCGCGATTGTGGATTCAGGAACATCCTTGCTTGCTGGTCCAACTACTGTCGTAACTCAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAGTTATTTCTGAATATGGGGAGCTGTTATGGGATCTCTTGGTATCAGGGGTACGACCTGGTGATGTGTGTTCACAAGTTGGTTTATGTTCTTTCAAGAATGATCACTCTAATAAGAGCATTGGGATTGAGATGGTGACTGAAAAGGAACATAGAGAGATATCAGCTAAAGGTAGCCCTTTGTGCTCTTCCTGTCAAATGCTTGTGGTTTGGATCCAGAATCAGCTGAAACAAAAGTCCACCAAGGAAGTGGTATTCAACTATGTTAATCAGTTGTGTGAGAGCTTGCCAAGTCCAAATGGAGAGTCGGTAGTAAGTTGTGATGGCATTTCTAAGTTGCCAAACATTACGTTTACTATCGGAACTAAACCTTATATCCTCACTCCAGAGCAGTATATTTTGAAAACCGGAGAAGGCATTGCAGAAGTTTGCCTTAGTGGGTTCATTGCTTTCGACATTCCTCCTCCTCGTGGTCCTATCTGGATTCTTGGTGATATCTTCATGAGGGTATATCATACCGTCTTTGACTACGGGAATCTCCGAGTTGGCTTTGCTAAAGCTTCATAG 1530 0.4157 MENKYLWVAFCLWALICSFLPSFSYGLMRIGLKKRSIDLQSIRASRSASAEQKLGRAIVGAYDQYIGEPQDDGIVPLKNFLDAQYYGEIGIGTPPQTFNVIFDTGSSNLWVPSSKCYFSLACYSHHWYKAKKSKTYTKNGTSCKISYGSGAISGFFSQDNVKVGNVIVKNQDFIEATREGSLSFVLAKFDGLFGLGFQEISVENAVPVWYSMVQQHLINEQVFSFWLNGDPNAKNGGELVFGGVDPKHFKGNHSYVPVTKKGYWQIEIGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTQINHAIGAEGVLSVECKEVISEYGELLWDLLVSGVRPGDVCSQVGLCSFKNDHSNKSIGIEMVTEKEHREISAKGSPLCSSCQMLVVWIQNQLKQKSTKEVVFNYVNQLCESLPSPNGESVVSCDGISKLPNITFTIGTKPYILTPEQYILKTGEGIAEVCLSGFIAFDIPPPRGPIWILGDIFMRVYHTVFDYGNLRVGFAKAS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0592 509 CDD phytepsin 75 507 IPR033869 GO:0004190
Lal13g0592 509 Gene3D Acid Proteases 28 243 IPR021109 -
Lal13g0592 509 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 4 508 IPR001461 GO:0004190|GO:0006508
Lal13g0592 509 Gene3D - 315 418 - -
Lal13g0592 509 SUPERFAMILY Saposin 316 418 IPR011001 -
Lal13g0592 509 ProSiteProfiles Peptidase family A1 domain profile. 85 506 IPR033121 -
Lal13g0592 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Lal13g0592 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Lal13g0592 509 SUPERFAMILY Acid proteases 14 508 IPR021109 -
Lal13g0592 509 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Lal13g0592 509 ProSiteProfiles Saposin B type domain profile. 379 420 IPR008139 -
Lal13g0592 509 Gene3D Acid Proteases 244 508 IPR021109 -
Lal13g0592 509 Pfam Eukaryotic aspartyl protease 84 508 IPR033121 -
Lal13g0592 509 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Lal13g0592 509 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Lal13g0592 509 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Lal13g0592 509 PRINTS Pepsin (A1) aspartic protease family signature 482 497 IPR001461 GO:0004190|GO:0006508
Lal13g0592 509 Pfam Saposin-like type B, region 1 381 418 IPR007856 GO:0006629
Lal13g0592 509 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Lal13g0592 509 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 4 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0592 Lal-Chr13 3861934 3866419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0592 K08245 - gmx:547993 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0592 13 3861934 3866419 Lal13g0592 13 3861934 3866419 ECH
Lal3g1422 3 20124345 20129706 Lal13g0592 13 3861934 3866419 PCT
Lal5g0187 5 1622831 1628804 Lal13g0592 13 3861934 3866419 PCT
Lal13g0592 13 3861934 3866419 Lal3g1422 3 20124345 20129706 PCT
Lal13g0592 13 3861934 3866419 Lal5g0187 5 1622831 1628804 PCT