Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1422 ATGACTATGGGGCACAAGCATTTTTTCGCGGCTTTCTGTTTATGGGCTTTAACATCTTCCTTTCTTCCTTCTTTCTCAAATGGACTTTTGAGAATTGGTTTGAAGAAGAAACCTTTTGATCTTCAGAGTCTTTATGCTTCTAAAAAGGCAAGAGAAAATACGAGGTTAGGAAGACCAATGATGGGTGTATATGATAAGTATATTGGTAATTCAAAAGGTGAAGATATAGTGCCTTTGAGTAACTATTTGGATGCTCAATATTTTGGTGAGGTTGGAATTGGTACACCTCCACAGAAATTTACTGTCGTATTCGATACCGGTAGTTCTAACCTTTGGGTTCCGTCATCAAAATGCTACTTTTCTATTGCCTGCTATGCTCATAATCGGTACAAGGCAAAGAAATCAAATACATATACCAAAAACGGAACGTCATGTAAGATAAGCTATGGCTCTGGAGCAATATCGGGTTTCTTCAGTCAAGATAATGTTAAAGTTGGTAATGTTGTTGTCAAGCATCAGGATTTCATCGAGGCTACCCGAGAAGGAAGTCTTTCCTTTCTGGCAGGAAGGTTTGATGGAATACTTGGGCTTGGGTTTCAGGAGATCTCAGTTGAAGATGCTGTGCCAGTATGGTACAATCTTGTGGAACAACATCTTGTAACTGAGAAAGTGTTCTCTTTTTGGCTCAACGGGGATCCAAATGCGAAAAAGGGTGGTGAATTAGTTTTTGGTGGTGTTGACCCGGAGCACTTCAAAGGAGAACACACTTACGTTCCAGTTACAAAAAAAGGTTATTGGCAGATTGAAATGGGAGATTTTCTCATTGGAGGTCTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGTTATTGTGGATTCAGGAACATCCTTGCTCGCTGGTCCAACTCCTGTTATTGCTGAAATCAACCATGCTATCGGAGCTGAAGGAGTTCTAAGTGTAGAATGTAAGGATGTTGTTTCTCAATATGGAGAGTTGATATGGGATCTCTTAGTATCAGGGGTAAAACCTGCTGACATATGTTCGCAAGTTGGGTTATGCTCATTCAAGAAGGATCTATCTAAGAGCGCTGGGATCGAGATGGTGACCGAAAAGGAGCAGGCAGAGTCAAAAGCTAGAGGAGATACTCCTTTGTGTTCATCTTGTCAAATGCTTGTGATTTGGATCCAGAATCAACTAAAACAAAAGGCAACAAAGGAAAGAGTATTCAGCTATGTGAACCAACTATGTGAGAGTCTTCCAAGTCCAGCTGGTGAGTCAGTGATAAGCTGTAATAGTCTTTCTCAGATGCCAAACATTACGTTCACTATCGGAGACAAACCTTTTGTCCTCACACCGGATCAGTATATTCTGAGAACTGGAGAAGGCATCACTGAAGTCTGCCTTAGTGGGTTTATTGCTCTTGATGTTCCGGCTCCGCGGGGTCCACTATGGATTATTGGTGATGTTTTCATGAGGGTATATCACACAGTCTTTGACTATGGGAATGTCCAAGTTGGTTTTGCCCTCTCAGCCTAA 1536 0.416 MTMGHKHFFAAFCLWALTSSFLPSFSNGLLRIGLKKKPFDLQSLYASKKARENTRLGRPMMGVYDKYIGNSKGEDIVPLSNYLDAQYFGEVGIGTPPQKFTVVFDTGSSNLWVPSSKCYFSIACYAHNRYKAKKSNTYTKNGTSCKISYGSGAISGFFSQDNVKVGNVVVKHQDFIEATREGSLSFLAGRFDGILGLGFQEISVEDAVPVWYNLVEQHLVTEKVFSFWLNGDPNAKKGGELVFGGVDPEHFKGEHTYVPVTKKGYWQIEMGDFLIGGLSTGVCEGGCAVIVDSGTSLLAGPTPVIAEINHAIGAEGVLSVECKDVVSQYGELIWDLLVSGVKPADICSQVGLCSFKKDLSKSAGIEMVTEKEQAESKARGDTPLCSSCQMLVIWIQNQLKQKATKERVFSYVNQLCESLPSPAGESVISCNSLSQMPNITFTIGDKPFVLTPDQYILRTGEGITEVCLSGFIALDVPAPRGPLWIIGDVFMRVYHTVFDYGNVQVGFALSA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1422 511 ProSiteProfiles Saposin B type domain profile. 381 422 IPR008139 -
Lal3g1422 511 Pfam Saposin-like type B, region 2 321 353 IPR008138 -
Lal3g1422 511 Gene3D Acid Proteases 246 511 IPR021109 -
Lal3g1422 511 PRINTS Pepsin (A1) aspartic protease family signature 93 113 IPR001461 GO:0004190|GO:0006508
Lal3g1422 511 PRINTS Pepsin (A1) aspartic protease family signature 239 252 IPR001461 GO:0004190|GO:0006508
Lal3g1422 511 PRINTS Pepsin (A1) aspartic protease family signature 289 300 IPR001461 GO:0004190|GO:0006508
Lal3g1422 511 PRINTS Pepsin (A1) aspartic protease family signature 484 499 IPR001461 GO:0004190|GO:0006508
Lal3g1422 511 Gene3D Acid Proteases 30 245 IPR021109 -
Lal3g1422 511 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 5 509 - -
Lal3g1422 511 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 5 509 IPR001461 GO:0004190|GO:0006508
Lal3g1422 511 Pfam Saposin-like type B, region 1 383 420 IPR007856 GO:0006629
Lal3g1422 511 SUPERFAMILY Acid proteases 11 508 IPR021109 -
Lal3g1422 511 ProSiteProfiles Peptidase family A1 domain profile. 87 508 IPR033121 -
Lal3g1422 511 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 289 300 IPR001969 GO:0004190|GO:0006508
Lal3g1422 511 Pfam Eukaryotic aspartyl protease 86 508 IPR033121 -
Lal3g1422 511 SMART sapb_4 281 353 IPR008139 -
Lal3g1422 511 ProSiteProfiles Saposin B type domain profile. 317 357 IPR008139 -
Lal3g1422 511 SUPERFAMILY Saposin 318 420 IPR011001 -
Lal3g1422 511 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 102 113 IPR001969 GO:0004190|GO:0006508
Lal3g1422 511 Gene3D - 317 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1422 Lal-Chr3 20124345 20129706 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1422 K08245 - gmx:548009 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1422 3 20124345 20129706 Lal3g1422 3 20124345 20129706 ECH
Lal3g1422 3 20124345 20129706 Lal5g0187 5 1622831 1628804 LSH
Lal3g1422 3 20124345 20129706 Lal13g0592 13 3861934 3866419 PCT
Lal13g0592 13 3861934 3866419 Lal3g1422 3 20124345 20129706 PCT