Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1614 ATGCCTTCCCTTCAGCTGTTGCAACTAACTCAGCATGGCCAGAGTTTTCTGGCTTCAAGGAGGAAAACGTTACTACTTGCAACTGGTATCTTAGCTGCTGGTGGAGCAGCTGCATATATGAAATCAAGGTTTAGAGTTAGTAAACATGATTTATTAGGTCATTGCAATGGGAACAACAATGGTAAAGAAGTCGCGAAGGATGACATTGAGAAGGATGCTGCTGCATCAAAAAATAAACAAAAGAAAGGGGGTTTGAAGTCACTTCAAGTCCTTGCTGCAATACTTCTATCTGAGATGGGCCAATTAGGTGCAAGGGACCTTTTAGCTTTAGTTGGCATAGTGGTGCTGCGAACTGCTTTGAGCAACAGGCTAGCAAAAGTGCAAGGCTTCCTTTTTCGTGCTGCTTTTCTTCGACGTGTGCCATTGTTTTTCCGGCTAATTTCAGAAAATATTATTTTGTGCTTCCTCTTATCAACCATTCAGTCGACGTCAAAGTACATATCTGGGACTTTGAGTCTGCATTTCAGAAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATAGCACATGTTGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCCAGTGATGTGCCAAAGTTCTGTTCAGAGTTGAGTGAAATTGTACTGGATGATTTAACAGCAGTAACTGATGGACTTCTATACACTTGGCGGCTGTGTTCATATGCTAGCCCGAAATATGTCTTCTGGATATTGGCTTATGTACTTGGAGCTGGGACTGCAATCAGAAACTTCTCCCCCTCATTTGGGAAACTTATGTCCAGAGAGCAGCAATTGGAAGGAGAGTACAGACAGCTTCACTCACGGTTAAGGACTCACTCAGAAAGTATAGCATATTACGGTGGAGAGAGGAGAGAAGAATCTCATATTCAACAGAAGTTTAAGGCCTTGGTTAGGCACATGAAAACTGTGCTTCATGACCATTGGTGGTTTGGCATGATTCAAGACTTTTTGTTGAAATACCTTGGTGCTACTGTTGCTGTTATTTTGATCATCGAGCCTTTCTTTTCTGGTCATCTAAAGCCTGATAGTTCAACTTTAGGTCGTGCAGAGATGTTGAGCAATCTAAGATATCATACTAGTGTCATAGTTTCCCTATTTCAGTCTCTAGGAACGCTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGTGGGTATGCCGATCGCATTTATGAGTTAATGGCTGTATCAAGGGAGCTAAGCTTGGTGGATGAGAATCCTTCGCTGCAAAGAAAGGGAAGTAAAAATTGCATAAGTGAAGCTAACTACATTGAATTTTCTGGAGTCAAGGCAATGACTTGCACCCTAATTCAGGTTGTGACTCCCACTGGTAATGTGTTGGTGGATGATCTTACCCTTAGGGTTGAGTCAGGCTCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAGAGTTCGCTTTTCCGTGTTCTAGGTGGTCTTTGGCCATTGATATCCGGACATATTGTGAAACCTGGCATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTACCACAAAGACCATACACTGCTGTAGGAACCCTTCGTGATCAGCTAATTTATCCTCTTACTTCAGATCAAGAGGTTGAACCACTTACAGATAGCGGGATGGTGGAACTATTGAAAAATGTTGACCTTGAATATCTTTTGGACCGATACTCACCTGAGAAAGAGGTAAATTGGGGTGATGAACTTTCGTTGGGAGAGCAGCAGAGGTTGGGCATGGCTAGACTTTTCTACCATAAGCCTAAATTTGCAATTCTTGATGAGTGCACAAGTGCTGTGACTACTGATATGGAAGAACGGTTTTGCGCTAAAGTTCGGGCCATGGGAACATCATGCATTACCATATCACATCGTCCAGCATTAGTTGCATTCCATGATGTGGTTTTATCCTTGGATGGTGAAGGAGGATGGAGTGTTGATTATAGAAGGGATGACTCTTCTACTGAAATGGGGATTGATACAATGAAGGCATCAGAGACAAAGCGTCAGAGTGATGCCAAGGCAGTTCAACGAGCATTTGCCATGAACAAAAAGGATTCTGCATTCTCAAATTCAGAGGCACAGTCATATGTAGCAGAGGTGATAGCATCATCTCCATCCATGAATCATTCTATTTCACCATCTGTTGTTCCCCAAATCCGTGGTAATACAAGGGTATTGCCATTGAGGGTGGCTGCAATGTGCAAAGTATTGGTGCCCACCGTACTTGATAAACAGGGTGCACAACTGCTTGCTGTTGCTTTTCTTGTTGTTTCAAGAACATGGGTCTCTGATCGTATTGCATCACTGAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCGTCCTTCATTCGGTTAATTGGTCTAAGTGTTATCCAAAGTGCTGCTTCTTCATTTATTGCACCTTCTATAAGACACTTGACAGCCAGGCTAGCCCTCGGTTGGCGTATTCGTTTGACACAACATCTACTCAAAAACTACTTGAGAAACAATGCATTCTACAAGGTCTTCAATATGTCAAGCAAAAATATCGACGCAGATCAGAGGCTAACTCATGATTTGGAGAAGTTAACAACCGACTTGTCTGGACTGGTCACTGGATTAGTAAAGCCATCTGTGGATATTTTGTGGTTCACTTGGAGAATGAAGCTATTAACTGGTCAGAGGGGAGTTGCAATACTCTATACTTACATGCTACTTGGTCTGGGATTTCTTAGAATTGTGACTCCTGATTTTGGTGATTTGATTAGCCAAGAACAAGAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCCCGAGAAAAAGCTATGGTTGAATCAAGATTCAGAGAGCTTCTGACCCATTCCAAGTACCATCTAAAAAAGAAGTGGGTGTTTGGTATACTGGATGATTTTATTACAAAGCAACTCCCTCATAATGTGACTTGGATGCTTAGCTTGTTGTATGCCATGGAACATCAGGGAGACCGTGCATCAATAAGTACCCAGGGTGATCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGTGACATTCTTGAATTGAATAGAAAGTTTGTAGAGCTTTCTGGTGGTATTAATCGGATTTTTGAGTTTGAAGAATTCCTGGACTCCGCACACTCTGGGAAATTCATCAACGACGGAGCTATACTTCCAGTGAGAGATATTCGTTCTAAAGATGCTATTTCTTTCTCTAAGGTTGATATTGTAACCCCTACTCAGAAGATGTTGGCCAGGGAGTTGACATGCGAAATTGAGCTTGGGGAAAGCCTGCTTGTCACTGGTCCAAATGGAAGTGGAAAAAGTTCCATTTTTAGAGTTCTCAGAGGACTTTGGCCAGTTGCAAGTGGAAGACTCTCTAGACCATCTGAAGATGTGGAACAAGAAGTTGGGTCAGGTCGTGGCATCTTCTATGTTCCTCAGCGTCCCTATACATGCTTGGGTACCCTGCGGGATCAAATTATATACCCCCTTTCCCGTGAGGAAGCAGAGTTTAGGGCTTTAAAGATGTATGGAAAAGGTGAAGTACACCCGGACACTGGAAATTTGCTGGACATCCACTTGCAAGTTATCCTTGAGAATGTTCGGTTGAATTATCTTTTAGAAAGGGATGAAAGAGGCTGGGATGCAAATCCAAACTGGGAAGACATTCTTTCTCTTGGGGAACAGCAGAGACTAGGCATGGCACGCTTGTTCTTCCATGAGCCTAAATTTGGTATCCTTGACGAGTGCACAAATGCAACAAGTGTTGATGTTGAAGAACACCTGTATGGGGTTGCGAAGGATATGGGAATCACATTTGTTACTTCCTCACAACGTCCTGCTTTAATACCATACCATTCCCTGGAATTGCGTCTAATTGATGGCGAGGGAAGAGAAATTGAATGGCAACAAGGTATCAACAACCAATTAACCCTTACAAGCGGCTGA 4065 0.4244 MPSLQLLQLTQHGQSFLASRRKTLLLATGILAAGGAAAYMKSRFRVSKHDLLGHCNGNNNGKEVAKDDIEKDAAASKNKQKKGGLKSLQVLAAILLSEMGQLGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFRLISENIILCFLLSTIQSTSKYISGTLSLHFRKILTKLIHSHYFENMVYYKIAHVDGRITNPEQRIASDVPKFCSELSEIVLDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTAIRNFSPSFGKLMSREQQLEGEYRQLHSRLRTHSESIAYYGGERREESHIQQKFKALVRHMKTVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLKPDSSTLGRAEMLSNLRYHTSVIVSLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSLVDENPSLQRKGSKNCISEANYIEFSGVKAMTCTLIQVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTDSGMVELLKNVDLEYLLDRYSPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVDYRRDDSSTEMGIDTMKASETKRQSDAKAVQRAFAMNKKDSAFSNSEAQSYVAEVIASSPSMNHSISPSVVPQIRGNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSVIQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRNNAFYKVFNMSSKNIDADQRLTHDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYTYMLLGLGFLRIVTPDFGDLISQEQELEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLTHSKYHLKKKWVFGILDDFITKQLPHNVTWMLSLLYAMEHQGDRASISTQGDLAHALRFLASVVSQSFLAFGDILELNRKFVELSGGINRIFEFEEFLDSAHSGKFINDGAILPVRDIRSKDAISFSKVDIVTPTQKMLARELTCEIELGESLLVTGPNGSGKSSIFRVLRGLWPVASGRLSRPSEDVEQEVGSGRGIFYVPQRPYTCLGTLRDQIIYPLSREEAEFRALKMYGKGEVHPDTGNLLDIHLQVILENVRLNYLLERDERGWDANPNWEDILSLGEQQRLGMARLFFHEPKFGILDECTNATSVDVEEHLYGVAKDMGITFVTSSQRPALIPYHSLELRLIDGEGREIEWQQGINNQLTLTSG 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1614 1354 Pfam ABC transporter transmembrane region 2 754 1019 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal4g1614 1354 Pfam ABC transporter transmembrane region 2 91 359 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal4g1614 1354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1104 1335 IPR027417 -
Lal4g1614 1354 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 151 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal4g1614 1354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 659 IPR027417 -
Lal4g1614 1354 SUPERFAMILY ABC transporter transmembrane region 769 1076 IPR036640 GO:0005524|GO:0016021
Lal4g1614 1354 Pfam ABC transporter 472 617 IPR003439 GO:0005524
Lal4g1614 1354 Pfam ABC transporter 1125 1291 IPR003439 GO:0005524
Lal4g1614 1354 CDD ABCD_peroxisomal_ALDP 460 663 - -
Lal4g1614 1354 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1101 1354 IPR003439 GO:0005524
Lal4g1614 1354 ProSitePatterns ABC transporters family signature. 1263 1277 IPR017871 GO:0005524
Lal4g1614 1354 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 600 1337 - -
Lal4g1614 1354 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 77 603 - -
Lal4g1614 1354 SUPERFAMILY ABC transporter transmembrane region 143 417 IPR036640 GO:0005524|GO:0016021
Lal4g1614 1354 Gene3D - 1100 1347 IPR027417 -
Lal4g1614 1354 SMART AAA_5 1132 1335 IPR003593 -
Lal4g1614 1354 SMART AAA_5 480 659 IPR003593 -
Lal4g1614 1354 CDD ABCD_peroxisomal_ALDP 1107 1337 - -
Lal4g1614 1354 ProSitePatterns ABC transporters family signature. 589 603 IPR017871 GO:0005524
Lal4g1614 1354 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 77 603 - -
Lal4g1614 1354 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 600 1337 - -
Lal4g1614 1354 Gene3D ABC transporter type 1, transmembrane domain 106 422 IPR036640 GO:0005524|GO:0016021
Lal4g1614 1354 Gene3D - 441 718 IPR027417 -
Lal4g1614 1354 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 447 686 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1614 Lal-Chr4 20330134 20344492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1614 1 1336 Acyl Lipid Metabolism Gene Families AT4G39850 77.307 0.0 2119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1614 K25819 - gmx:100813765 2328.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1614 4 20330134 20344492 Lal21g1287 21 16199095 16213825 LSH
Lal4g1614 4 20330134 20344492 Lal17g1625 17 17611896 17624628 LSH