Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1287 ATGCCTTCCCTTCAGCTGTTGCAACTAACTAAGCATGGCCAGAGTTTTCTGGCTTCAAGGAGGAAAACTTTACTACTTGCAACCGGTATCTTAGCTGCTGGTGGAGCAGCTGCATATATGCAATCAAGGTTTAGGGTTAATAAACATGATTTGTTAGGCCATTGCAATGGGCACAGCAATGATAAAGAAGTCGCAAAGGATGAGGTTGTGAAGGATGCTGCTGATTCAAAAAATAAACAAAAGAAAGGGGGTTTGAAGTCACTTCAAGTCCTTGTTGCAGTTCTTCTATCTGAGATGGGTCAATTAGGTGCAAGGGACCTTTTATCTTTAGTTGGCATAGTGGTGCTGCGAACTGCTTTGAGCAACAGGCTAGCAAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGTGTGCCATTGTTTTTCCGGTTAATATCAGAAAATATTATTTTGTGCTTCCTCTTATCAACCATTCACTCTACGTCAAAGTACATAACTGGAACTTTGAGTCTGCATTTCAGAAAAATATTGACAAAGCTAGTCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATGTCACATGTTGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCAAGTGATGTACCAAGGTTCTGTTCGGAGTTGAGTGAAATTGTACAGGATGATTTAACAGCAGTAGCTGATGCAGTTCTATACACTTGGCGACTGTGTTCATATGCTAGCCCGAAATATGTCTTCTGGATATTGGCCTATGTAGTTGGAGCTGGTACCGTGATCAGAAACTTCTCTCCCTCATTTGGGAAACTTATGTCCAGAGAGCAGCAACTGGAAGGAGAGTATCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATATTACGGTGGAGAGAGGAGAGAAGAATCTCATATTCAACAGAAGTTTAAGACCTTGGTTAGGCACATGAAAATTGTGCTTCATGACCATTGGTGGTTTGGCATGATTCAAGACTATTTGTTGAAGTACCTTGGTGCTACTGTTGCTGTTATTTTGATCATCGAGCCTTTCTTTTCTGGCCATCTAAAGCCTGATAGTTCAACTTTAGGACGTGCAGAGATGTTAAGCAATCTAAGATATCATACTAGCGTCATTGTTTCCCTATTTCAGTCTCTAGGAGTACTTTCTATCAGTGCAAGACGCCTCAGTCGTCTCAGTGGGTATGCCGATCGCATTTATGAGTTAATGTCTGTATCAAGGGAGCTAAGCTTAGTGGATGAGAATTCTTCACTGCAAAGAAAAGGGAGTAGAAATTGCACAAGTGAAGCTAACTATATTGAATTTTCTGGAGTGAAGGTTGTGACCCCCACTGGTAATGTCTTGGTGGATAATTTGACTCTTAAGGTTGAGCCAGGCTCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAGAGCTCGCTTTTCCGTGTTCTAGGTGGTCTTTGGCCATTGATATCTGGATATATTGTGAAACCTGGCGTTGGCTCTGATCTTAATAAGGAGATTTTCTATGTACCACAAAGACCATACACTGCTGTAGGAACCCTTCGTGATCAGCTAATTTATCCTCTTACTTCAGATCAAGAGATTGAACCACTCACAGATAGCGGGATGATGGAACTATTGAAAAATGTTGACCTTGAATATCTGTTGGACCGTTACCCGTCTGAGAAGGAGGTAAATTGGGGTGACGAACTTTCGTTGGGTGAGCAGCAGAGGTTGGGCATGGCTAGACTTTTCTACCATAAGCCTAAATTTGCAATTCTTGATGAGTGCACAAGTGCTGTAACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTTCGGGACATGGGAACATCATGCATTACCATCTCACATCGTCCAGCATTAGTGGCATTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATGGAAGGGAGGACTCTTCTACTGAAATGGGGATTGATAAGATGAAGACATCAGAGACAAATCGACAGAGTGATGCCAAGGCAGTTCAACGAGCATTTGCCATTAACAAAAAGGATTCTGCATTCTCAAATTCAAAGGCACAGTCATATATTGCAGAAGTAGTAGCGTCATCTCCATCTATGAATCATTCTATTTCACCATCTGTTGTTCCCCAAATCCGTGGTAATACAAGAGTATTGCCATTTAGGGTTGCTGCCATGTCTAAAGTATTGGTACCCACTGTACTTGATAAACAAGGTGCCCAACTGCTTGCTGTTGTTTTTCTTGTTGTTTCAAGAACATGGGTCTCGGATCGTATTGCATCACTTAATGGTACTTCTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTCTAAGTGTTCTGCAAAGTGCTGCTTCTTCTTTTATTGCACCTTCTATAAGACACTTGACAGCCAGGCTAGCCCTCGGGTGGCGGATTCGTTTGACACAACATCTACTCAAAAACTACTTGAGAAACAACGCATTCTACAAGGTAATTGGATATGAATTATTCATTAGTTCTTTTACTTCCCCTATTAATTTAACATGGTAA 2607 0.4135 MPSLQLLQLTKHGQSFLASRRKTLLLATGILAAGGAAAYMQSRFRVNKHDLLGHCNGHSNDKEVAKDEVVKDAADSKNKQKKGGLKSLQVLVAVLLSEMGQLGARDLLSLVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKILTKLVHSHYFENMVYYKMSHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVADAVLYTWRLCSYASPKYVFWILAYVVGAGTVIRNFSPSFGKLMSREQQLEGEYRQLHSRLRTHSESIAYYGGERREESHIQQKFKTLVRHMKIVLHDHWWFGMIQDYLLKYLGATVAVILIIEPFFSGHLKPDSSTLGRAEMLSNLRYHTSVIVSLFQSLGVLSISARRLSRLSGYADRIYELMSVSRELSLVDENSSLQRKGSRNCTSEANYIEFSGVKVVTPTGNVLVDNLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLISGYIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEIEPLTDSGMMELLKNVDLEYLLDRYPSEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRDMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYGREDSSTEMGIDKMKTSETNRQSDAKAVQRAFAINKKDSAFSNSKAQSYIAEVVASSPSMNHSISPSVVPQIRGNTRVLPFRVAAMSKVLVPTVLDKQGAQLLAVVFLVVSRTWVSDRIASLNGTSVKFVLEQDKASFIRLIGLSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRNNAFYKVIGYELFISSFTSPINLTW 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1287 868 Pfam ABC transporter 463 609 IPR003439 GO:0005524
Lal21g1287 868 Gene3D - 433 710 IPR027417 -
Lal21g1287 868 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 73 596 - -
Lal21g1287 868 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 592 852 - -
Lal21g1287 868 SUPERFAMILY ABC transporter transmembrane region 144 417 IPR036640 GO:0005524|GO:0016021
Lal21g1287 868 Pfam ABC transporter transmembrane region 2 746 852 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal21g1287 868 Pfam ABC transporter transmembrane region 2 91 359 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal21g1287 868 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524
Lal21g1287 868 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 151 339 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal21g1287 868 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 592 852 - -
Lal21g1287 868 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 73 596 - -
Lal21g1287 868 SMART AAA_5 472 651 IPR003593 -
Lal21g1287 868 CDD ABCD_peroxisomal_ALDP 447 655 - -
Lal21g1287 868 Gene3D ABC transporter type 1, transmembrane domain 15 424 IPR036640 GO:0005524|GO:0016021
Lal21g1287 868 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 447 678 IPR003439 GO:0005524
Lal21g1287 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 651 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1287 Lal-Chr21 16199095 16213825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1287 1 850 Acyl Lipid Metabolism Gene Families AT4G39850 78.337 0.0 1356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1287 K25819 - gmx:100813765 1473.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1614 4 20330134 20344492 Lal21g1287 21 16199095 16213825 LSH
Lal21g1287 21 16199095 16213825 Lal17g1625 17 17611896 17624628 LSH