Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1625 ATGCCTTCCCTTCAGCTGTTGCAACTAACTCAGCATGGCCAGAGGTTTATGGCTTCGAGGAGGAAAACTTTACTACTTGCAACTGGTATCTTAGCTGCTGGTGGAGCAGCTGCATATATGAAATCAAGGTTCGGAGTTAATAAACATGTTTTATTAGACCATTGCAATGGGCACAGCAAGGGTGAAGAAGTTACAAAGGACAAGGTTGCGTCTTCATCAAAAAATAAACAAAAGAAAGGGGGGTTTAAGTCACTTAAAGTCCTTACTGCACTTCTTCTGTCTGAGATAGGCCAATCAGGAGCTACGAACCTTTTAGCTTTAGTTGGCACAGTGGTGCTGCGAACTGCTTTGAACAACAGGCTAGCAAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACATGTGCCATTGTTTTTCCGGCTAATATCAGAAAATATTATTTTGTGCTTCTTCATATCAACCATTCAGTCTACGTTGAAGTACTTAACTGGGACCTTGGGTCTGCATTACAGAAAAATATTGACAAAGCATATCCATTCCCACTATTTTGAGAACATGACGTATTACAAAATATCACATGTTGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTACGGAGTTGAGTGAAATTGTACAGGATGATTTAATAGCAGTAATTGATGCACTTCTATACACTTGGCGGTTGTGTTCTTACGCTAGCCCAAAATATGCCATCTGGTTATTGGGCTTTGTACTTGGATCTACGACCGCAACCAAAATCTTCTCCCCCACATTTGGGAAACTTATGTCCACAGAGCAGCAATTAGAAGGAGAGTATCGACAGCTTCACTCGCGATTAAGGACTAACTCAGAAAGTATAGCATATTACGGTGGAGAGAAGAGAGAAGAATCTCATATTCAACAGAAATTTAAGACCTTGGTTAGGCACATAAAAGTTGTGCTTTATGACTATTGGTGGTTTGGCACGATTGAAGACTTTTTGTTGAAGTACCTTGGTGCTGCTGTTTCTGTTATTTTGATCGCTGAGCCTTTCTTTCATGGTCATATAAATCCTGATAGTTCAACTTTAGAGCGTGCAGAGATGTTAAGCAATCTAAGATATCATCACAGTGTCATATTTTCCCTATTTCAGTCTCTAGGAACACTTTCTATCAGTACAAGACGGCTCAATCGTCTCAGTGGTTATGCCTATCGTATCAATGAGTTAATGGCTGTATCAAGGGAGCTAAGCTCGGTGGATGTCAAACCTTCACTGAAAAGAAAAGGAAGTAGCCATTGCATAAGTGAAGCTGACTACATTGAATTTAATGAAGTTGTGACCCCCAACGGTAATGTCTTGGTGGATCGTCTGAACCTTAGGATTGACTCAGGCTCAAATCTTTTGATTACAGGTCCAAATGGTAGTGGAAAGAGCTCTCTTTTCCGGGTTTTAGGTGGTCTTTGGCCATTGATATCTGGATATATTACGAAACCTGGCACTGGCTCTAATCTTAATAAGGAGATTTTCTATGTACCACAAAGACCATACACTGCTGTAGGGACCCTTCGTGATCAGATAATTTATCCTCTTACTGCAGATCAAGAGGTTGAACCACTCACAGATAGCAGGATGGTGGAACTATTGAAAAATGTTGACCTTGAACATCTGTTGGACCGTTACTCGCCTGAGAAAGAGGTAAACTGGGGTCAAGAACTTTCTTTAGGTGAGCAGCAGAGGTTGGGCATGGCTAGACTTTTCTACCATAAGCCTAAATTTGCAATTCTTGATGAGTGCACAAGTGCTGTCACTACTATTATGGAAGAACGGTTTTATTCTGAAGTCCGGGCCATGGGAACATCATGCATTACCATCTCACACCGTCCAGCATTAGTTGCATTCCATGATGTGGTTTTAGCCTTAGATGGTGAAGGAGGATGGGCTGTTCATAATAGAAGGGAGGACTCTTCTACTGAAATGAAGATTCCTACAATGAAGGCATCAAAGACAAAGCGACAGAGTGAGGCCAAGGCAGTTCAGCAAGCATTTTTCATGAACAAAAAGGACTCTGCACTCTCAAATTTAAAGGCACAGTCGTATATTTCAGAGGTGATAGCATCATCTCCATCTATGAATCGTTCTATTTCTCCATCTCTTGTTGTTCCCCAACTCTATGGTAAAACAAGGACATTGCCGTTGAGGGTTGCTTCCACGTGCAAAGTATTGGTACCCACTGTATTTGATAAACAAGGTTTGCAAATGCTTGCTGTTGCTTTTCTCGTCGCTTCAAAAACATGGGCCTCAGATCGTATTGCAAAACTGAATGGTACGGTTGTGAAGTATGTTATGGAGCAGGATAGAGCTTCCTTTATTAGGATAATTGGTATAAGTATTCTCCAAAGTGCTGCTGCTTCTTTTATTGCACCTTCTATAAGACACATGACAGGCAAGCTGGCCCTCGGGTGGCGGATTCATTTGACACAACATCTTCTCAAAAACTACTTGAGAAACAATACATTCTACAAGGTAATTGGATATGAATTATTCAATAGTTCTTTTCCTACCCCTGTTAATTTAACATTGGTATCTCTTCACGGCCTCACTCTATGGATCTTCAACATGTCGAGCAAAAATATCGACGCAGACCAGAGGCTAACTCATGATTTGGAGAAGTTTACAACCGACATGTCTTTACTGGTCCCTGGATTAGTAAAGCCAACTGTGGATATTTTGTGGTTCACGTGGAGAATGAAGCTGTTAACTGGCCAGAGGGGAATTGCCATACTCTATACTTACATGTTACTTGGTCTGGGATTTCTTAGAATTGTTACTCCTGATTTTGGTGATTTGATAAACCAAGAACTACAACTCGAAGGAACCTTTAGGTTCATGCATGAAAGACTTCGGACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGACGCCCGTGAAAAAGCTATTGTTGAAGCAAGATTCATAGAGCTTCTCACCCATTCCAAGTACCTTCTTAAAAAGAAGTGGGTGTTCGGCATACTGGATGATTTTATTACAAGACAACTCCCTAATAATGTGACTTGGTTGCTTAGCTTGTTGTATGCCGTGGAACGACACGGAGATGTTGCATCAGTGAGTAGCGAGGGTGATCTGGCAAACACATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGTGACATTCTTAAATTGGATAGAAAGTTTGTAGAGATTTCCGGTGGTATTAATCGGATTTCCGAGCTGGAAGAAATCATGGATGCAGCACAGTCTGGGAATTTTATCAGTAATGAAGCTATACTTCCAGTGAAGGATTTTGGGTCTAAAGATGCTATTTCTTTTTCTAAGGTTGATATTGTAACCCCTAATCACAAGATATTGGCCAGGGAGTTGACATGTGACATTGAGCTTGGGGATAGCATGCTTATTACTGGTCCAAATGGAAGTGGAAAAAGTTCTGTTTCCAGAGTTCTCAGAGGACTTTGGCCAGTTGCAAGTGGAAGTCTCTCTAAACCATCTGAATATGTGGATCATTGTGGTATCTTCTATGTCCCTCAGAGGCCCTATACATGCTTGGGTACCCTGAGAGACCAAATTATATACCCCTTGTCCCGCGAGGAAGCCGAGTTTAAGGCATTGAAGATGTATGGAAAAGGTACATTAGACCCTGACACTGGAAATTATTTGGACGCACGCTTGCAAGTTGTCCTAGAGAATGTTCAGTTGAATTATCTTTTAGAAAGGGATGAAAGAGGCTGGGATGCAAGTCCTAACTGGGAAAGTATTCTTTCTCTTGGGGAACAACAGAGATTAGCCATGGCACGCTTGTTCTTCCATGAGCCTAAATTTGCTATCCTTGATGAGTGCACAAATGCAACTAGTGTTGATATTGAAGAACAACTATATGGGATTGCAAGGGATATGGGAATCACATTTGTTACTTCCTCACAACGACCTGCTTTAATACCATTCCATTCTTTGGAATTGAGGCTGATTGATGGAGAGGGTAATTGGGAGCTTAGAAAAATCAAGCAATGA 4071 0.4134 MPSLQLLQLTQHGQRFMASRRKTLLLATGILAAGGAAAYMKSRFGVNKHVLLDHCNGHSKGEEVTKDKVASSSKNKQKKGGFKSLKVLTALLLSEIGQSGATNLLALVGTVVLRTALNNRLAKVQGFLFRAAFLRHVPLFFRLISENIILCFFISTIQSTLKYLTGTLGLHYRKILTKHIHSHYFENMTYYKISHVDGRITNPEQRIASDVPRFCTELSEIVQDDLIAVIDALLYTWRLCSYASPKYAIWLLGFVLGSTTATKIFSPTFGKLMSTEQQLEGEYRQLHSRLRTNSESIAYYGGEKREESHIQQKFKTLVRHIKVVLYDYWWFGTIEDFLLKYLGAAVSVILIAEPFFHGHINPDSSTLERAEMLSNLRYHHSVIFSLFQSLGTLSISTRRLNRLSGYAYRINELMAVSRELSSVDVKPSLKRKGSSHCISEADYIEFNEVVTPNGNVLVDRLNLRIDSGSNLLITGPNGSGKSSLFRVLGGLWPLISGYITKPGTGSNLNKEIFYVPQRPYTAVGTLRDQIIYPLTADQEVEPLTDSRMVELLKNVDLEHLLDRYSPEKEVNWGQELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTIMEERFYSEVRAMGTSCITISHRPALVAFHDVVLALDGEGGWAVHNRREDSSTEMKIPTMKASKTKRQSEAKAVQQAFFMNKKDSALSNLKAQSYISEVIASSPSMNRSISPSLVVPQLYGKTRTLPLRVASTCKVLVPTVFDKQGLQMLAVAFLVASKTWASDRIAKLNGTVVKYVMEQDRASFIRIIGISILQSAAASFIAPSIRHMTGKLALGWRIHLTQHLLKNYLRNNTFYKVIGYELFNSSFPTPVNLTLVSLHGLTLWIFNMSSKNIDADQRLTHDLEKFTTDMSLLVPGLVKPTVDILWFTWRMKLLTGQRGIAILYTYMLLGLGFLRIVTPDFGDLINQELQLEGTFRFMHERLRTHAESVAFFGGDAREKAIVEARFIELLTHSKYLLKKKWVFGILDDFITRQLPNNVTWLLSLLYAVERHGDVASVSSEGDLANTLRFLASVVSQSFLAFGDILKLDRKFVEISGGINRISELEEIMDAAQSGNFISNEAILPVKDFGSKDAISFSKVDIVTPNHKILARELTCDIELGDSMLITGPNGSGKSSVSRVLRGLWPVASGSLSKPSEYVDHCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEFKALKMYGKGTLDPDTGNYLDARLQVVLENVQLNYLLERDERGWDASPNWESILSLGEQQRLAMARLFFHEPKFAILDECTNATSVDIEEQLYGIARDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRKIKQ 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1625 1356 SMART AAA_5 467 647 IPR003593 -
Lal17g1625 1356 SMART AAA_5 1148 1355 IPR003593 -
Lal17g1625 1356 Gene3D - 433 699 IPR027417 -
Lal17g1625 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 648 IPR027417 -
Lal17g1625 1356 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 438 671 IPR003439 GO:0005524
Lal17g1625 1356 Pfam ABC transporter 459 604 IPR003439 GO:0005524
Lal17g1625 1356 Pfam ABC transporter 1141 1302 IPR003439 GO:0005524
Lal17g1625 1356 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1123 1354 IPR003439 GO:0005524
Lal17g1625 1356 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 362 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal17g1625 1356 ProSitePatterns ABC transporters family signature. 1274 1288 IPR017871 GO:0005524
Lal17g1625 1356 CDD ABCD_peroxisomal_ALDP 444 650 - -
Lal17g1625 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1120 1345 IPR027417 -
Lal17g1625 1356 Gene3D - 1114 1343 IPR027417 -
Lal17g1625 1356 Pfam ABC transporter transmembrane region 2 88 356 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal17g1625 1356 Pfam ABC transporter transmembrane region 2 876 1034 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal17g1625 1356 Pfam ABC transporter transmembrane region 2 743 847 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal17g1625 1356 Gene3D ABC transporter type 1, transmembrane domain 86 421 IPR036640 GO:0005524|GO:0016021
Lal17g1625 1356 SUPERFAMILY ABC transporter transmembrane region 136 414 IPR036640 GO:0005524|GO:0016021
Lal17g1625 1356 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 587 848 - -
Lal17g1625 1356 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 76 591 - -
Lal17g1625 1356 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 874 1356 - -
Lal17g1625 1356 ProSitePatterns ABC transporters family signature. 576 590 IPR017871 GO:0005524
Lal17g1625 1356 CDD ABCD_peroxisomal_ALDP 1123 1349 - -
Lal17g1625 1356 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 874 1356 - -
Lal17g1625 1356 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 587 848 - -
Lal17g1625 1356 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 76 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1625 Lal-Chr17 17611896 17624628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1625 1 1356 Acyl Lipid Metabolism Gene Families AT4G39850 68.271 0.0 1893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1625 K25819 - gmx:100813765 2042.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1614 4 20330134 20344492 Lal17g1625 17 17611896 17624628 LSH
Lal21g1287 21 16199095 16213825 Lal17g1625 17 17611896 17624628 LSH