Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1601 ATGTCGTCGAAGCCGATTCATCAGTGGAAGGTTACTGAGCTGAAAGAGGAGTTAAAGAGGAGGAGACTAACTACTAGTGGTTTGAAGAGTGATTTAGTTAGGCGTTTGGACGAAGCCCTTCGTGCTGAAATGGAGGCTTCTGAGAAGGAAAAGGAGGTGAATGGTTTCGAGGGTCATGGCGATGATGGTGGGGTGAAGGATTCCGTGACATTTGAAGCTGTTGAGAAGGAGAATTCTGGTGTAGTTGAAACAATTGGAGCAGAAAATGCAGAAAAGGTTCTGGGTGCTGTGGTTGATGACAGCGGAAAGAATGATAAGAAGGATGGTGTTACCGATCTAGTTGACAACAGTGCGTCTGCCGTGGATCGAGATGTTGAATCTACAGGATTGCCTGTTATTGTGGATTCTTCAAATGTGGGAGAGGATCTAATTACTCATGCTTCTGTTGTGGAGACCACGACCATCACCACAGTCACCGAGAGTGTATGGACGGAAGCAGTAAGCGGTGGTGAAGATTCTCACAACGCAGAAAAAAATATCGAGGATTCAGGAACCAAGCTAGAGAATGAGGAGATCAAGGTACATAGCACAGATAAGAATAACGACGGTTCTGAAACCAAGCTGGAAAATGAGGAGTCAATGGTGAATAGTGCAGAAAAGAATAATGAAGTTTTAGGGACAAAGCTGGAGAATGAGATAAAGCCCCGACTGGAATCTGTGACAAAGCCCCAGTACGAGGATCCCGTGCCCAACTCTTCTGTTCCTGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGTAGGGTCTCAAGTAAAATCTGATTATATTTCTAGTGATTCTGTGTCAATTAATGAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAGGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGTACCTGTTTATGATGAATCACATTCAATGGATGTTGGAGAGCTTCATGAGAAAAAGCCATCCGTTGAAGAAAATAGCAATATTGTTACAAGTTCAAGCTTGAACATAACCAATAGCAGTGATTATGTGGGGTCTCCAGAAAAATTAAATTTGGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGAGTAAGCAACTTGACTCTAAGTTTAATGTTAATGAACTTAGAGACAAAGTGGAGGGTACTGAAGTGCCTACCATGAAGGAGGAAAACAATACTGTAGTTGTTGGAGATGGTCATTCTGGAGGAAAAAGTGATGCCAACCAAGATATTGACATGAGTCCACTTGTCCCGGCTGAGAAACGAAGACTCAATGATGCTATTCACTATTTGAAAAAACCATTCAAATGGCAACGTCCACCATTTTCTGCTTTAAGACCGCCTTGGCGGTTGCAGTTAATGGCGGAAAAGATGAATCAAGCCCCCCTCTCTCATCTTCGCCTGCTTCATCTCTCTCTAATTCCTCTGCTTCGTTTTCGTTCAAGGCAGTTGCTTTGTCTTCCACCACGACCGGCGCAACTTCTTTTTTGCTTCAAGTTTGTGGGATCTGCTTCATCTTCTTTTACTGTTTTGTTTCAACACAAACAAGCATCACTTGAGAGCATTGAGCCTGCAAAAAGGCAACGTAGGTGGAACACTGAAGTCGTTAAAGGACCAGAACCACAAATCACTACTCCCAGATCTGCTACTACACCCAAGGGCGAGCCAGTTGCTCTGAAACGTAACTTCTCTAGGTCTGATTCCTTTGCATCTGATGATGTACCTAAAGAACGTGTCGTTCCACCATCACAAAGGCCCCCAACTAATTCCCTCAGGATTGACCGTTTCCTCCGACCGTTTACCCTAAAAGCAGTGCAAGAGCTTCTTGGTAAGACTGGGAAAGTTAACAGTTTCTGGATGGACCAAATAAAGACCCACTGCTATGTTACTTACTCATCCATTGAAGAAGCCACTGAGACACGAAATGCTGTGTATAATCTGCAATGGCCTCTAAATGGCGGACGCCTATTAGTTGCTGAGTATGTTGAGCCTGAAGAAGTGAAGCTGAAGATAGAACCTCCTCCTAGTCAGGCTCCCCCCTTCAGCGGTGGTCCAGCCATACCTCCCGCACCACCTTCACAGCCAGAGCCTTCCCCCCGTCAGCACCAGCAGCTGCCCCCACCTCCAGGTACTCTCCCACCCCCACCTCCATTGTCGAAGGCCCCACCAGTAGCAAGAGAGCGGCTTCCATCTCCACCACCCCTTCCTGAGAAAGTTGACCCTCCCATTGTCACTCTCGATGATCTCTTCCGTAAGACCACTGCAACTCCTCGAATCTACTATCTACCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTTGCAGCACAGGGTAAGAGCTCCAGGCAGTGGGCATGA 2418 0.4533 MSSKPIHQWKVTELKEELKRRRLTTSGLKSDLVRRLDEALRAEMEASEKEKEVNGFEGHGDDGGVKDSVTFEAVEKENSGVVETIGAENAEKVLGAVVDDSGKNDKKDGVTDLVDNSASAVDRDVESTGLPVIVDSSNVGEDLITHASVVETTTITTVTESVWTEAVSGGEDSHNAEKNIEDSGTKLENEEIKVHSTDKNNDGSETKLENEESMVNSAEKNNEVLGTKLENEIKPRLESVTKPQYEDPVPNSSVPENQVSEVNPSLVGSQVKSDYISSDSVSINEKNELKDTIITDNVKLEQDIVRPEMVEEPSSRNVPVYDESHSMDVGELHEKKPSVEENSNIVTSSSLNITNSSDYVGSPEKLNLDRSSGDDSMEEDLPESKQLDSKFNVNELRDKVEGTEVPTMKEENNTVVVGDGHSGGKSDANQDIDMSPLVPAEKRRLNDAIHYLKKPFKWQRPPFSALRPPWRLQLMAEKMNQAPLSHLRLLHLSLIPLLRFRSRQLLCLPPRPAQLLFCFKFVGSASSSFTVLFQHKQASLESIEPAKRQRRWNTEVVKGPEPQITTPRSATTPKGEPVALKRNFSRSDSFASDDVPKERVVPPSQRPPTNSLRIDRFLRPFTLKAVQELLGKTGKVNSFWMDQIKTHCYVTYSSIEEATETRNAVYNLQWPLNGGRLLVAEYVEPEEVKLKIEPPPSQAPPFSGGPAIPPAPPSQPEPSPRQHQQLPPPPGTLPPPPPLSKAPPVARERLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSSRQWA 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1601 805 MobiDBLite consensus disorder prediction 225 241 - -
Lal4g1601 805 MobiDBLite consensus disorder prediction 694 761 - -
Lal4g1601 805 ProSiteProfiles SAP motif profile. 6 40 IPR003034 -
Lal4g1601 805 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 3 460 - -
Lal4g1601 805 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 535 800 - -
Lal4g1601 805 MobiDBLite consensus disorder prediction 341 362 - -
Lal4g1601 805 Pfam RNSP1-SAP18 binding (RSB) motif 758 798 IPR032552 -
Lal4g1601 805 MobiDBLite consensus disorder prediction 171 216 - -
Lal4g1601 805 Coils Coil 201 228 - -
Lal4g1601 805 Pfam SAP domain 8 40 IPR003034 -
Lal4g1601 805 MobiDBLite consensus disorder prediction 368 386 - -
Lal4g1601 805 SUPERFAMILY SAP domain 6 42 IPR036361 -
Lal4g1601 805 MobiDBLite consensus disorder prediction 166 265 - -
Lal4g1601 805 MobiDBLite consensus disorder prediction 245 265 - -
Lal4g1601 805 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 3 460 - -
Lal4g1601 805 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 535 800 - -
Lal4g1601 805 Gene3D SAP domain 6 53 IPR036361 -
Lal4g1601 805 MobiDBLite consensus disorder prediction 692 764 - -
Lal4g1601 805 SUPERFAMILY RNA-binding domain, RBD 603 691 IPR035979 GO:0003676
Lal4g1601 805 CDD RRM_ACINU 609 693 IPR034257 -
Lal4g1601 805 MobiDBLite consensus disorder prediction 45 66 - -
Lal4g1601 805 SMART sap_9 6 40 IPR003034 -
Lal4g1601 805 MobiDBLite consensus disorder prediction 555 611 - -
Lal4g1601 805 MobiDBLite consensus disorder prediction 328 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1601 Lal-Chr4 20176652 20181424 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1601 K12875 - gmx:100786288 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1601 4 20176652 20181424 Lal21g1281 21 16072042 16075906 LSH
Lal4g1601 4 20176652 20181424 Lal17g1611 17 17493220 17501858 LSH