Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1611 ATGTCGTCGAAGCCGATTCATCAGTGGAAAGTTACAGAGCTGAAAGAGGAGCTGAAGAGGAGGAGGTTAACTACTACTGGTTTGAAGAATGATTTAATCAGGCGTTTGGATGATGCTCTTCGTGCCGAAAGGGACGCCGTTGAAGCTTCCGAGAAGGAAGAGGAAGTGAATGGTTTTGAGAGTCATGATATTGAAGCTGAGACTGTCACTGTGGATGATGTTGCTGTTGATAAGATGGAGAACGAGGGAAAATTTGAAGCCGCCGAGAAAGAGAATGTTGGCGTAGTTGAACCTGTTGAAATGGATAAGGAAGAAAAGGTTCTGGAGGGTTTGGTTGATGATAGCAGTAAGAAGGACAAGCAGGATGATGTTACCATTCCAATTGATAATAGTGCATCGGCCATCGATCAAGATGTTGAACCTACGGGCTTGCCCGCTGTTGTTGATTCTAAAAATGCGGGAGAGGAGCTAATTACTCATGCATCTGTTGTGGAGACTACCACTACCATAGTCACTGACAGTGTATTGATGGAAGTAGTAGTCGATGGTGAAGATTCTCACAGCGCTGAAAAAAATATCGATGATTCAGGAACCAAGATGGAGAACGAGGAGTTAGAGGCGCATGTCACCGATAAAAATAACGATGGCGCAGGACCCGAGCTGCAGAATGAGGAGTCAAAGGGACAGCTGGATAATGAGGACTCAAGGCCCCGACTGGAGTCTGACACAAAGCCTGCGTACGAGGATCTTGTGCCCAACTCTTCTGCTCCTGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGTAGGGTCTCAAGTAAAATCTGATTCTATTTCTAGTGATTCTGTGTCAATTAATGAAAAGAATGAACTAAAGAATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAGGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGAACCTGTTGAAGAAAATAGCAATATTGTTACAAGTCCAGACTTGAACAAATCCAATAGTAGTGATGATGTGGGGTATCCAGAAAAGTTAAACTTAGATAGAAGTTCTGGAGATGATTCCATGGAGGAGGATTTGCCCGAGAGTAAGCAATTTGACTCTAAGTTTAATGTTGATGAACCGAGTGACAAAGTGGAGAGTACCAAAGTGCCAACTGTGAAGGAGGAAAATAGCACTGTTGTTGTGGGAGATGGTCAATGTGGAGGAAAAAATTATGCCCACCAGGATATTGACATGAGTCCAGTTGACCTGGTTGAGAAACGAAAATTTAATGAACAAGCATCAGTTGGGAACAATGAGCCCGTAAAAAGGCAACGTAGGTGGAACGTTGAAGCAGTTAAAGGACCACATCCACAAAGCATTACTCCCAAGGATGGGCCAGTTTCTCTGAAACGCAACTTCTATAGGTCTGATTCCTCTGCAACTGATGACGCACCTAAAGAACGCATTGTTCCACCATCACAAAGGCCCCCAACTAATTCCCTCAGGATTGATCGTTTCCTCCGTCCTTTTACTCTAAAAGCAGTGCAAGAGCTTCTTGGTAAGACTGGAAAAGTTGGCAGTTTCTGGATGGACCAAATAAAGACCCACTGCTATGTTACTTACTCATCCATCGAAGAAGCCATTGAGACACGAAATACTGTTTATAATCTGCAATGGCCTCCAAATGGTGGGCGCCTCTTAGTTGCTGAGTATGTTGAGCCTGACGAAGTGAAGATGAAGTTAGAACCTCCTACCAGTCAGGCTCCTTCCCTCAGCAGTGGTCCAGCTGTTCCTCCTGCACCACCTTCTTCACAGCCAGAGCCTTCCCCCCGCCTTCACAGGGATCTGCCTCCTGCTCCAGTTACTCTCCCACCTCCACCGCCATTGTCCCCACCAGTGCCAAGAGAAAGGCTTCCATCATCACCACCCTTTGCTGAGAAAGCTGACCTGCCTATTGTCACTCTGGATGATCTCTTCCGCAAAACAACAGCAACTCCTCGGATCTACTATCTACCTTTGTCGGAAGAGCAAGTTATTGCAAAACTCGCAGCACAAGCTTTATCACATTGGTGTATATTTCACCGAAGTAAAGCCGAACTGGTTGTTGCAACATGGAAAACACAATTTGACAATTCAGAGATGGTTCAAAGAGTCCCTCTTCTGTACCTTGCAAATGACATTCTCCAGAACAGCAAGCGGAAAGGAAATGAATTTGTGACCGAGTTTTGGAAGGTTCTTCCTGCAGCATTTAAAGATGTTATTAAGATTGGTGATGATATTGGGAAGCGTGTGGTATCTAGACTGGTTGAAATATGGGAGCAAAGGAGAGTGTTTGGATCTAAGGCGCGGAACCTTAAGGATCTAATGCTCGGAGAAGAAGTGCCTCCACCGTTGGAATTTGGCAAAAAGCGAGCACGTTCTGTAAAAATTGTGAAAAGGGATTCTCGCTCCATTAAATCGAGATTGTCCATAGGAGGCACAGCAGAAAAAATAGTGTCTGGATTTCATTTGGTGCTCAGTGAACAATCCATTGAAGATGCAGAGATGAGTAAATGCAAGTCCGCTGTTCAGCGTGTGAGGAAGATGGAAAAGAATGTTGACATTGCATGCACTATCGCCAAGGATCCCAAGCGAAAAACTTTGGCAAAGGAACTAGTGGAGGAAGAAAATAATTTGAAACAATGCATTGAAAAACTTAAATCAGTTGAAGCGAGTAGAGTAGCACTTGTATCTCAGTTAAAAGAAGCTTTGCATGAGCAGGAGTCTGAACTGGAGAATGTTCGAACCCAGATGCAGGTTGCACAAGCACAACTAGAAGAGGCTAGCAACATGCGTGAGCGTCTTAATAATGAAGATTCGTCAAAGAAAACATCCACAACTTCAGCTACTGATGCAAATGCAAAATCAGAAGCAGCAACTAAAAAATCAGCTGCAGCAATTGCTGCTTTGGTTGCAGATAAGCTTGCAGCTTCTTCGTCATCTCAATTAATCATGACTTCTGTTCTTTCAACATTTGCAGCAGAAGAGGCAAAGAATGCTGGTCTAACTTCCGAGTCGACATCAAAACAAGAGAAGTCAATGCCTAATGCCGATCCCCATGTTTTTATGCCCACACAACAATACATTGCTGCACCAAACCAGTCATATCCTTCAGTTTTGGTAACCCAACCAACCATGCAGAATACAGGCCCTGCATCACAAGGTCAATACCACATGCTTTCTAATCCATCATCGCAGCAGTATGTGCAGTCAACAGGAGGGGTTATCTCTCCATATGGTTATGCTAGCATGCCTCCATTACCGTCAGCGCCGCCTCCAACCCCTCCTCCTCCTCCACCCCATGCAGTGTCGACAATGATGCCTTTGACACATCAGACACTGCAAATAAGTCAGCATCAACCAATACCGATAGCACATCAACCCCCAGCACCGCCGAGTTTTCTGCCACTTCAGCCACCAGGAATGGGGTACTTTGCTAATCATCAGCATTCTACATGA 3495 0.4452 MSSKPIHQWKVTELKEELKRRRLTTTGLKNDLIRRLDDALRAERDAVEASEKEEEVNGFESHDIEAETVTVDDVAVDKMENEGKFEAAEKENVGVVEPVEMDKEEKVLEGLVDDSSKKDKQDDVTIPIDNSASAIDQDVEPTGLPAVVDSKNAGEELITHASVVETTTTIVTDSVLMEVVVDGEDSHSAEKNIDDSGTKMENEELEAHVTDKNNDGAGPELQNEESKGQLDNEDSRPRLESDTKPAYEDLVPNSSAPENQVSEVNPSLVGSQVKSDSISSDSVSINEKNELKNTIITDNVKLEQDIVRPEMVEEPSSRNEPVEENSNIVTSPDLNKSNSSDDVGYPEKLNLDRSSGDDSMEEDLPESKQFDSKFNVDEPSDKVESTKVPTVKEENSTVVVGDGQCGGKNYAHQDIDMSPVDLVEKRKFNEQASVGNNEPVKRQRRWNVEAVKGPHPQSITPKDGPVSLKRNFYRSDSSATDDAPKERIVPPSQRPPTNSLRIDRFLRPFTLKAVQELLGKTGKVGSFWMDQIKTHCYVTYSSIEEAIETRNTVYNLQWPPNGGRLLVAEYVEPDEVKMKLEPPTSQAPSLSSGPAVPPAPPSSQPEPSPRLHRDLPPAPVTLPPPPPLSPPVPRERLPSSPPFAEKADLPIVTLDDLFRKTTATPRIYYLPLSEEQVIAKLAAQALSHWCIFHRSKAELVVATWKTQFDNSEMVQRVPLLYLANDILQNSKRKGNEFVTEFWKVLPAAFKDVIKIGDDIGKRVVSRLVEIWEQRRVFGSKARNLKDLMLGEEVPPPLEFGKKRARSVKIVKRDSRSIKSRLSIGGTAEKIVSGFHLVLSEQSIEDAEMSKCKSAVQRVRKMEKNVDIACTIAKDPKRKTLAKELVEEENNLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQLEEASNMRERLNNEDSSKKTSTTSATDANAKSEAATKKSAAAIAALVADKLAASSSSQLIMTSVLSTFAAEEAKNAGLTSESTSKQEKSMPNADPHVFMPTQQYIAAPNQSYPSVLVTQPTMQNTGPASQGQYHMLSNPSSQQYVQSTGGVISPYGYASMPPLPSAPPPTPPPPPPHAVSTMMPLTHQTLQISQHQPIPIAHQPPAPPSFLPLQPPGMGYFANHQHST 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1611 1164 MobiDBLite consensus disorder prediction 44 65 - -
Lal17g1611 1164 Pfam RNSP1-SAP18 binding (RSB) motif 646 684 IPR032552 -
Lal17g1611 1164 SMART sap_9 6 40 IPR003034 -
Lal17g1611 1164 Coils Coil 877 904 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 226 245 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 943 970 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 346 389 - -
Lal17g1611 1164 Gene3D - 679 790 IPR008942 -
Lal17g1611 1164 Coils Coil 909 950 - -
Lal17g1611 1164 Pfam CID domain 682 780 IPR006569 -
Lal17g1611 1164 SUPERFAMILY ENTH/VHS domain 684 778 IPR008942 -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 475 498 - -
Lal17g1611 1164 Gene3D SAP domain 6 56 IPR036361 -
Lal17g1611 1164 SMART 558neu5 673 789 IPR006569 -
Lal17g1611 1164 ProSiteProfiles SAP motif profile. 6 40 IPR003034 -
Lal17g1611 1164 SUPERFAMILY SAP domain 6 43 IPR036361 -
Lal17g1611 1164 Pfam SAP domain 8 40 IPR003034 -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 183 213 - -
Lal17g1611 1164 SUPERFAMILY RNA-binding domain, RBD 491 578 IPR035979 GO:0003676
Lal17g1611 1164 MobiDBLite consensus disorder prediction 82 101 - -
Lal17g1611 1164 CDD CID_RPRD_like 674 779 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 953 969 - -
Lal17g1611 1164 Coils Coil 33 53 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 303 320 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 321 344 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 109 141 - -
Lal17g1611 1164 CDD RRM_ACINU 497 581 IPR034257 -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 181 405 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 253 300 - -
Lal17g1611 1164 PANTHER ENTH/VHS FAMILY PROTEIN 684 1163 - -
Lal17g1611 1164 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 684 1163 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 580 644 - -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 593 638 - -
Lal17g1611 1164 ProSiteProfiles CID domain profile. 646 793 IPR006569 -
Lal17g1611 1164 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1611 Lal-Chr17 17493220 17501858 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1611 K15559 K12875 gmx:100786288 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1601 4 20176652 20181424 Lal17g1611 17 17493220 17501858 LSH
Lal21g1281 21 16072042 16075906 Lal17g1611 17 17493220 17501858 LSH