Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1281 ATGTCGTCGAAGCCGATTCATCAGTGGAAGGTTACAGAGCTGAAAGAGGAGTTGAAGAGGAGGAGGCTAGCTACCACTGGTTTGAAGAATGATTTAGTGAGACGTTTAGATGATGCCCTTCGCGAAGAAAGGGAGGCTGCCGAGGCTTCCGAGAAAGAGGTGAATGGTATTGAGGGTCATGATAATGAAGCTGAGGTCAAAGATTCTGAGATTGTTGCTGAGGATGCTGTAGCTGTTGATGAAAGGGAGAATGCGGAAAAAGTTGAAGCTGCTGAGGAGAATGTCGGTTTATCTGCACCGACTGAAGGGGAAAAGGCAGAAAAGGTTCTAGAGGGTGTGGTTGATGACAGCAGTAAATATGACAAGCAGGATGGTGTTACCATTCCAGTTGACAATAGTGCATCGACCATGGATCAAGATGTTGAACCTACGGGGTTGCCTGCTGTTGTTGATTCTTCAAATGTGGGAGAGGAGCTATTTACTCACACTACTGTTGTGGAAACCACCACCACCACCACTGTCACTGAGAGTGTATCGATGGAAGTAGTAGTTGGTGGTGAAAATTCTCACAGCACTGAAAAAAAGATCGAGGATTCAGGAACCAAGCTGGGGAATGAGGAGTTGAAGGCGAATAGTGCAGAAAATAATACTGAGGATTTAGGGGCGCAGCTGGATAATGAGGAGTCAAAGGCGCAGCTGGATAATGAGTACTCAACGCCCCAACTGGAGTCTGACACAAAGGCCCCAAACGAGGATCTTTTGCCCAACTCTGCTGTTCCTAAAAACCAGGTATCTGAGGTAAACCCTAGTTTACTAGGGTCTCAAGTAAAATCTGATTCTATTTTTAGTGATTCTGTATCAATTAATGAAAAGAATGAACTAAAGGATAATATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAGGCCGGAGATGGTGGAAGAACCATCGTCCAGAAATGAACCAGTTTATGGTGAATCACATTCAATGGATGTTGGAAAGCCACATGAGAAAAAGCTATCTTTTGAAGAAAATAGCAATGTTGTTACAAGTCCAGACTTGAACAAAACCAATATCAGTGATGATGTGGGGTATCCAGAGAAGTTAAACTTAGATAGAAGTTCTGGTGATGACTCCATGGAGGAGGATTTGCCCGAGAGCTCTAAGATTAATGTTGATGAACCTAGAGACAAAGTGGAGAGTACTGAAGTGCCTGCTGTGAAGGAGGAAAATAGTAATGTTGTTGTGGGAGATGGACAATCTGGAGGAAAAAGTGATGTCCATCAAGATATGGACGTGAGTCCAGTTAGCCTGGTTAAAAAACGAATATTCAATGAACAAACACTAGTTTGCAGCAATGATCCTGCAAAAAGGCAACGTAGGTGGAATACTGAAACAGTTAAAGGACCTAATCCACAAAGCACTACTCCCAGATCCACTACTACTACACCCAAGGATGGACCAGTTTCTCTGAAACACAACTTCTCTAGGTCTGATTCTTTTGCAACTGACGATGCACCTAAAGAACGCATTGTTCCACCATCACAAAGGTCCCCGACTAATTCCCTCAGGATTGACCGTTTCCTCCGTCCTTTTACCCTAAAAGCAGTGCAAGAGCTTCTTGGTAAGACTGGGAAAGTTAGCAGTTTCTGGATGGACCAAATAAAGACCCACTGCTATGTTACTTACTCGTCCATCGAAGAAGCCATTGAGACACGAAATGCTGTGTATAATCTGCAATGGCCTCCGAATGGTGGGCGCCTCTTACTTGCTGAGTATGTTGAGCCTGAAGAAGTGAAGATGAAGTTAGAACCTCCTCCTAGTCAGGCTCCGTTCATCAGTAGTGGTCCAGCTGTTCCTCCCGCACCACCTTCACAGCCAGAGTCTTCCCCCCGTCCTTACCGAGAACTGCCTCCAGCTACTCTCCCACCTCCCCCACCATTGTCAAAGCCCCCACCAGTAGCAATAGAACGACTTCCATCTCCGCCGCTCCTTCCTGAGAAAGCTGACCTGCCTATAGTCACTCTGGATGATCTCTTCCGCAAAACCAAAGCAACTCCTCGAATCTACTATCTACCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTTGCAGCACAAGGTAAAAGCTCCAGGCAGTAG 2145 0.4499 MSSKPIHQWKVTELKEELKRRRLATTGLKNDLVRRLDDALREEREAAEASEKEVNGIEGHDNEAEVKDSEIVAEDAVAVDERENAEKVEAAEENVGLSAPTEGEKAEKVLEGVVDDSSKYDKQDGVTIPVDNSASTMDQDVEPTGLPAVVDSSNVGEELFTHTTVVETTTTTTVTESVSMEVVVGGENSHSTEKKIEDSGTKLGNEELKANSAENNTEDLGAQLDNEESKAQLDNEYSTPQLESDTKAPNEDLLPNSAVPKNQVSEVNPSLLGSQVKSDSIFSDSVSINEKNELKDNIITDNVKLEQDIVRPEMVEEPSSRNEPVYGESHSMDVGKPHEKKLSFEENSNVVTSPDLNKTNISDDVGYPEKLNLDRSSGDDSMEEDLPESSKINVDEPRDKVESTEVPAVKEENSNVVVGDGQSGGKSDVHQDMDVSPVSLVKKRIFNEQTLVCSNDPAKRQRRWNTETVKGPNPQSTTPRSTTTTPKDGPVSLKHNFSRSDSFATDDAPKERIVPPSQRSPTNSLRIDRFLRPFTLKAVQELLGKTGKVSSFWMDQIKTHCYVTYSSIEEAIETRNAVYNLQWPPNGGRLLLAEYVEPEEVKMKLEPPPSQAPFISSGPAVPPAPPSQPESSPRPYRELPPATLPPPPPLSKPPPVAIERLPSPPLLPEKADLPIVTLDDLFRKTKATPRIYYLPLSEEQVAAKLAAQGKSSRQ 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1281 714 Coils Coil 210 230 - -
Lal21g1281 714 MobiDBLite consensus disorder prediction 346 360 - -
Lal21g1281 714 MobiDBLite consensus disorder prediction 44 149 - -
Lal21g1281 714 MobiDBLite consensus disorder prediction 467 499 - -
Lal21g1281 714 MobiDBLite consensus disorder prediction 44 90 - -
Lal21g1281 714 Gene3D SAP domain 6 52 IPR036361 -
Lal21g1281 714 MobiDBLite consensus disorder prediction 231 262 - -
Lal21g1281 714 Pfam RNSP1-SAP18 binding (RSB) motif 670 709 IPR032552 -
Lal21g1281 714 MobiDBLite consensus disorder prediction 368 407 - -
Lal21g1281 714 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 3 711 - -
Lal21g1281 714 MobiDBLite consensus disorder prediction 188 204 - -
Lal21g1281 714 CDD RRM_ACINU 522 606 IPR034257 -
Lal21g1281 714 MobiDBLite consensus disorder prediction 104 122 - -
Lal21g1281 714 MobiDBLite consensus disorder prediction 454 521 - -
Lal21g1281 714 SMART sap_9 6 40 IPR003034 -
Lal21g1281 714 MobiDBLite consensus disorder prediction 184 204 - -
Lal21g1281 714 ProSiteProfiles SAP motif profile. 6 40 IPR003034 -
Lal21g1281 714 SUPERFAMILY RNA-binding domain, RBD 516 604 IPR035979 GO:0003676
Lal21g1281 714 MobiDBLite consensus disorder prediction 603 670 - -
Lal21g1281 714 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 3 711 - -
Lal21g1281 714 Pfam SAP domain 8 40 IPR003034 -
Lal21g1281 714 MobiDBLite consensus disorder prediction 612 662 - -
Lal21g1281 714 MobiDBLite consensus disorder prediction 312 432 - -
Lal21g1281 714 Coils Coil 29 53 - -
Lal21g1281 714 SUPERFAMILY SAP domain 6 43 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1281 Lal-Chr21 16072042 16075906 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1281 K12875 - gmx:100786288 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1601 4 20176652 20181424 Lal21g1281 21 16072042 16075906 LSH
Lal21g1281 21 16072042 16075906 Lal17g1611 17 17493220 17501858 LSH