Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1547 ATGACACAAGGCAATTTTATTATTCCAAAAACATTGGCTATGCTATGCTTAGCCAGCATAGTAGTTCTCACACAGGGACAAATAACCCCACCACCACCAGAAAACATAGCCAAAAACCTTCAAACTGACCCTGAAACCCTTTCACAAGCCTCAATCGATTATGGCCACATAGCTCATGCAAATGCATCAGCAGTTTTTGAACCAGCGTCAGTAAATGATATAATAGAATTGATAAAGTATTCAAATTCTATTGAAAAACCTTTCACCATAGCAGCTAGAGGGCAAGGTCATTCAGTAGATGGACAAGCCATGGCACAAAATGGTGTTGTTGTGAATATGACTCATTTGGGTGATTTCAGAAATGGGTCTGGGATTATAGTGTCTGATCAATATGTTGATGTGGGTGGTGAACAAATATGGATTGATGTGTTACATGAAACACTTAAACGTGGACTCACTCCACTTTCTTGGACTGATTACTTGTATTTATCAGTTGGTGGCACTCTCTCTAACGCTGGGATCAGTGGCCAAACATTCAGATTCGGACCTCAGATTTCCAATGTTCTTGAATTGGATGTTGTTACTGGAAAAGGAGAGTTAATAACATGTTCTGCTGGGAAAAATTCTGAAGCATTTTATGCTGTTCTTGGAGGATTAGGCCAATATGGAATTATAACAAGAGCAAGAATAGCTTTAGGACTAGCACCCTCTAGGGTGAAGTGGCTTCGATTGATTTACACCGATTTCTCTGCATTTTCTGCAGACCAAGAACATTTAATTTCATTGAATGGCACTAATGCAGCAGATTATGTAGAAGGTTTACTTATACTTAATAAACCACCATTGGATCTTTCATTTTTTCCAGAATCTGATCAACCAAGAATATCTTCTTTGATCACTAAATATGGCATTGTTTACACCATAGAACTAGTCAAATACTATGACCCTAATTCTCAAGCAAAAGTTGAAGAGGAAGTTGCAAATTTGCTCAAAGAATTAAAGTTTGTTCCTACATTTTCATTTGAAAAAGATGCGTCATATGAAGAGTTTCTGGATAGAGTGCATGCAACTGAACTAGTTCTTAGACCAAAAGGACTTTGGGAGGTTCCTCATCCTTGGTTAAACCTCTTCATTCCAAAGTCCCGAATATCAGATTTTAATGAAGGTGTCATTAAGAGTATTATTCTTAACCAAAATATTTCTGCAGAAGTTTTTATACTCTATCCAATGAATCGAAACAAGTGGAATGATAATATGTCAGCAGTTATACCAGATGAAGATGTTTTCTACACAGTTGGTCTATTGCATTCAACTGAGATTGATAAGGTTGGTGTTGTTAAAGCTCAAAACCAACAAATACTACAGTTTTTTAAGAATGCTGGTATTCAGATCAGAGAGTATCTTGCTCCACACAAAACACATGAAGAATGGGTGCAACACTTTGGCTCCAAATGGGATCTGATTCAAAAAAGAAAAGATGAGTTTGATCCCAAAAAATTATTGTCACCTGGACAAGGGATTTTCAACTAA 1530 0.3699 MTQGNFIIPKTLAMLCLASIVVLTQGQITPPPPENIAKNLQTDPETLSQASIDYGHIAHANASAVFEPASVNDIIELIKYSNSIEKPFTIAARGQGHSVDGQAMAQNGVVVNMTHLGDFRNGSGIIVSDQYVDVGGEQIWIDVLHETLKRGLTPLSWTDYLYLSVGGTLSNAGISGQTFRFGPQISNVLELDVVTGKGELITCSAGKNSEAFYAVLGGLGQYGIITRARIALGLAPSRVKWLRLIYTDFSAFSADQEHLISLNGTNAADYVEGLLILNKPPLDLSFFPESDQPRISSLITKYGIVYTIELVKYYDPNSQAKVEEEVANLLKELKFVPTFSFEKDASYEEFLDRVHATELVLRPKGLWEVPHPWLNLFIPKSRISDFNEGVIKSIILNQNISAEVFILYPMNRNKWNDNMSAVIPDEDVFYTVGLLHSTEIDKVGVVKAQNQQILQFFKNAGIQIREYLAPHKTHEEWVQHFGSKWDLIQKRKDEFDPKKLLSPGQGIFN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1547 509 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 11 509 - -
Lal4g1547 509 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 236 508 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lal4g1547 509 PANTHER GULONOLACTONE OXIDASE 11 509 - -
Lal4g1547 509 SUPERFAMILY FAD-linked oxidases, C-terminal domain 236 509 IPR016164 GO:0003824|GO:0050660
Lal4g1547 509 SUPERFAMILY FAD-binding/transporter-associated domain-like 39 232 IPR036318 GO:0050660
Lal4g1547 509 Gene3D - 43 508 IPR016167 -
Lal4g1547 509 Gene3D - 238 467 IPR016170 -
Lal4g1547 509 ProSiteProfiles PCMH-type FAD-binding domain profile. 58 235 IPR016166 GO:0071949
Lal4g1547 509 Gene3D - 113 237 IPR016169 -
Lal4g1547 509 Pfam FAD binding domain 63 204 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1547 Lal-Chr4 19634876 19639527 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1547 K00279 - gmx:100808553 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1532 17 16736074 16740687 Lal4g1547 4 19634876 19639527 LSH
Lal21g1208 21 15014706 15020729 Lal4g1547 4 19634876 19639527 LSH
Lal14g1676 14 16970920 16975613 Lal4g1547 4 19634876 19639527 PCT
Lal4g1547 4 19634876 19639527 Lal14g1676 14 16970920 16975613 PCT