Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1532 ATGGCAACCAATAACAAACATCCAAACCCATGGTCACCACTCGAAGCACCCAAAGAGATAGCTAAAAAGCTTAGTCTTGACCCTAAAACCCTTTCACTATTCTCAACAGATTTTGGCCTGATAGAAAATAAAACACCACTAGCAGTTTTTGAACCATCCTCTGAAAGTGATATCATAGACTTAATAAAATACTCAAATTCTCTTCCAATTCCTTTCACTATTGCACCAAGAGGGCAAGGTCATTCAACCCATGGACAAGGCTTAACAAATGATGGTGTTGTGTTGAATTTGAATCGATTGGGTGATTTCAGAAATGGGTCTGAGATTGTAGTGCATGATGAATATGTTGATGTTGGTGCTGAACAACTTTGGATTGATGTGTTGCGTGCAACACTTAAGCATGGTCTCACACCACTTTCTTGGACTGATTACATGTATTTATCAGTTGGTGGAACACTCTCTAATGCTGGAATCAATGGCACAACCTTCAGATTTGGTCCTCAGATTTCTAATGTCCTTGAATTGGATGTTGTTACAGGAAAAGGAGAACTGTTAACATGTTCTACTGATAAGAACTCAGAGCTATTTTATAGTGTGAAATGGCTTCGTCTGTTCTACACTGACTTCTCTGAATATACCAAAGACCAAGAATATTTAATCTCATTCAATGAAAAAAATGAGACTAGAGGAGCAGATCATGTAGCAGGTTACATTCTAGCAAATCTGCCACCACCAAGGGATGTTTCCTTTTATCCAAAACAAGATCTGCCAAGGATAGACTCTTTGATCTCCCAACATGGCCTTGTCTACACCCTTGAGTTAGGCAAATTTTATGACAATGATTCCCATGTTGAAGAGGAACTTGCAAATTTGTTCAAAGGATTGAAGTTTATTCCGGAATTTGCATTTGAAAAAGATGTATCATATGAGGAGTTCCAGAATAGACTTCGAGTGGAAATAGAATTTCTTAGGTCAAATGGAATTTTGGAGGTCCCTCATCCTTGGATGGACTTATTCATTCCAAAATCTCGAATATCAGATTTTAATGATGGGGTATTCAAGGATATTATTCTTAAGCAAAATATTCCTGCTGCTAGTATTATATTCTACCCCATGAACCATAACAAGTGGGATGATAGAATGTCAGCAGTTACACCAGATGAAGATATTTTCTATGCTTTGGGATTTTTTCGTGCAGCTTTTGGTAATGGGGAAGTGGAAGCTTCTGAGGCTCAAAATGAAGAGATACTAGAATTCTGTAAGGATGCTGGTATTCAAGCTAAGGTTTATCTTGCTTCATACAAAACACAAGAAAGATGGGTTGAACACTATGGCTCCAAATGGGAACTTATTAAAGATAGAAAAGATGAATTTGATCCTAAGAAAATATTATCACCTGGACAGAAGATTTTCAATTAA 1419 0.3728 MATNNKHPNPWSPLEAPKEIAKKLSLDPKTLSLFSTDFGLIENKTPLAVFEPSSESDIIDLIKYSNSLPIPFTIAPRGQGHSTHGQGLTNDGVVLNLNRLGDFRNGSEIVVHDEYVDVGAEQLWIDVLRATLKHGLTPLSWTDYMYLSVGGTLSNAGINGTTFRFGPQISNVLELDVVTGKGELLTCSTDKNSELFYSVKWLRLFYTDFSEYTKDQEYLISFNEKNETRGADHVAGYILANLPPPRDVSFYPKQDLPRIDSLISQHGLVYTLELGKFYDNDSHVEEELANLFKGLKFIPEFAFEKDVSYEEFQNRLRVEIEFLRSNGILEVPHPWMDLFIPKSRISDFNDGVFKDIILKQNIPAASIIFYPMNHNKWDDRMSAVTPDEDIFYALGFFRAAFGNGEVEASEAQNEEILEFCKDAGIQAKVYLASYKTQERWVEHYGSKWELIKDRKDEFDPKKILSPGQKIFN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1532 472 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 198 471 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lal17g1532 472 Gene3D - 7 107 IPR016167 -
Lal17g1532 472 SUPERFAMILY FAD-binding/transporter-associated domain-like 24 199 IPR036318 GO:0050660
Lal17g1532 472 PANTHER GULONOLACTONE OXIDASE 7 472 - -
Lal17g1532 472 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 7 472 - -
Lal17g1532 472 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 46 81 IPR006093 GO:0016491
Lal17g1532 472 ProSiteProfiles PCMH-type FAD-binding domain profile. 42 248 IPR016166 GO:0071949
Lal17g1532 472 Pfam FAD binding domain 46 188 IPR006094 GO:0050660
Lal17g1532 472 Gene3D - 108 200 IPR016169 -
Lal17g1532 472 Gene3D - 201 430 IPR016170 -
Lal17g1532 472 SUPERFAMILY FAD-linked oxidases, C-terminal domain 199 472 IPR016164 GO:0003824|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1532 Lal-Chr17 16736074 16740687 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1532 K00279 - gmx:100816815 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1532 17 16736074 16740687 Lal21g1208 21 15014706 15020729 LSH
Lal17g1532 17 16736074 16740687 Lal4g1547 4 19634876 19639527 LSH
Lal14g1676 14 16970920 16975613 Lal17g1532 17 16736074 16740687 PCT
Lal17g1532 17 16736074 16740687 Lal14g1676 14 16970920 16975613 PCT