Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0817 ATGGCGATCACCGGTGAAAATGAAGACACCGCAGACTACAGTGGCGCGTCACTCCCTTCCTCAGGCTCAGACGCAAAGAACCGCACAGTGACCTACTTCTACGAACCCACAATCGGCGACTACTACTACGGCCAAGGCCACCCTATGAAGCCCCACCGTATCCGCATGGCTCACAACCTCATTATCCACTACAACCTCCACCGCCGCATGCGGATCATCCGCCCCTTCCCCGCCGGCCCGGAGGACATACGCCGCTTTCACTCCCCAGACTACGTCGATTTCCTCGCCTCCGTCTCACCGGAGCTTGCGGAGACTAATCACTCTCACTACCGCCAACTCAAGCGGTTCAATGTCGGAGAGGATTGCCCTGTCTTTGATGGACTCTTTGATTTCTGTCAGGCCTCCGCCGGTGGATCGATTGGTGCTGCGGTGGTGCTCAACCGCGGCGACACGGAGATTGCTATCAATTGGGCTGGGGGATTGCACCATGCTAAGAAGGCTGAAGCTTCTGGGTTTTGCTATGTCAATGATATTGTTCTAGGGATTCTTGAGCTTCTCAAGGCTCACAAGCGTGTGTTGTATGTTGATATCGATGTTCACCATGGAGATGGCGTCGAGGAGGCATTTTACACTACTGATAGAGTGATGACGGTATCTTTTCATAAGTTTGGAGATTTTTTCCCTGGCACTGGACACATTAAAGACACTGGGTGGGGCCCTGGAAAGAATTATGCTCTCAATGTTCCGTTAAATGATGGAATGGATGATGAGAACTTCCGATCTCTTTTTCGTCCCATCATTCAAAAAGTCATGGAGGTTTATCAGCCTGATGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGACAGGATTGGCGTCTTCAACTTGTCTGTGAAAGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTCTAATGGTCTTGGGCGGGGGAGGATATACGGTTCGGAATGTTGCACGCTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTAGTAATAATTTGCCTTACAATGAATACTATGAGTATTTTGGCCCTAACTATACTCTTCATGTTGAACCAAGCAACGTGGTGAACCAAAACACGGCGAAGGATATGGAAAAAATTAGGAACACACTACTGGAGCAACTTTCCAGACTTCCACACGCTCCTAGTGCACCTTTTCAGACAACACCATCATCCACACAAGTTCCTGAAGAGGAAGAAGAGGAAATGGAACCAAGATCAAAGCATCCCATATGGACTCGTGAAGTTTCTGATTTTGATTCTGATGATGAAAAGCCTAGTACAAAATTCTCAAACATAACCACCCACATGAGGCCTGATGCAGATGATATGGAAGAAGATAAGCCAGAAGTGCCTCCATCATCCAAGTATTCCTAG 1428 0.4832 MAITGENEDTADYSGASLPSSGSDAKNRTVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIIHYNLHRRMRIIRPFPAGPEDIRRFHSPDYVDFLASVSPELAETNHSHYRQLKRFNVGEDCPVFDGLFDFCQASAGGSIGAAVVLNRGDTEIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKAHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGWGPGKNYALNVPLNDGMDDENFRSLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRIGVFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPSNNLPYNEYYEYFGPNYTLHVEPSNVVNQNTAKDMEKIRNTLLEQLSRLPHAPSAPFQTTPSSTQVPEEEEEEMEPRSKHPIWTREVSDFDSDDEKPSTKFSNITTHMRPDADDMEEDKPEVPPSSKYS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0817 475 PANTHER HISTONE DEACETYLASE 6 14 444 - -
Lal4g0817 475 MobiDBLite consensus disorder prediction 418 446 - -
Lal4g0817 475 PRINTS Histone deacetylase signature 49 66 IPR003084 GO:0004407|GO:0016575
Lal4g0817 475 PRINTS Histone deacetylase signature 82 100 IPR003084 GO:0004407|GO:0016575
Lal4g0817 475 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Lal4g0817 475 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Lal4g0817 475 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Lal4g0817 475 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Lal4g0817 475 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Lal4g0817 475 SUPERFAMILY Arginase/deacetylase 29 394 IPR023696 -
Lal4g0817 475 Gene3D Histone deacetylase domain 19 407 IPR037138 -
Lal4g0817 475 MobiDBLite consensus disorder prediction 1 23 - -
Lal4g0817 475 CDD HDAC_classI 33 341 - -
Lal4g0817 475 Pfam Histone deacetylase domain 47 339 IPR023801 -
Lal4g0817 475 PANTHER HISTONE DEACETYLASE 14 444 - -
Lal4g0817 475 MobiDBLite consensus disorder prediction 395 475 - -
Lal4g0817 475 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Lal4g0817 475 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Lal4g0817 475 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Lal4g0817 475 MobiDBLite consensus disorder prediction 453 475 - -
Lal4g0817 475 PIRSF HDAC_I_euk 12 472 IPR003084 GO:0004407|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0817 Lal-Chr4 6883627 6897887 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0817 K06067 - gmx:100819221 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0817 4 6883627 6897887 Lal4g0817 4 6883627 6897887 ECH
Lal14g1500 14 15903333 15907487 Lal4g0817 4 6883627 6897887 PCT
Lal19g1058 19 14348680 14354892 Lal4g0817 4 6883627 6897887 PCT
Lal4g0817 4 6883627 6897887 Lal14g1500 14 15903333 15907487 PCT
Lal4g0817 4 6883627 6897887 Lal19g1058 19 14348680 14354892 PCT