Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1058 ATGGGTATGGGTGATGAGAGTGGTATTGCACTACCATCTTCTGGTCAAGACGCTAAGAAACGAAGGGTTACCTACTTCTACGAACCCACCATCGGTGATTACTACTACGGCCAAGGCCACCCTATGAAACCACACCGAATCCGCATGGCCCACAACCTCATTGTACACTATTCCCTCCACCGCCACATGGAGATCAACCGCCCCTTCCTCGCCGGACCTGATGATATCCGCCTCTTCCATTCCCCCGATTACGTCGATTTCCTCGCTTCTGTCTCCCCTGAGACTCTCTCTGAGGCTGCCTTTTCTCGCCAACTTAAACGTTTCAACGTCGGCGAGGATTGTCCGGTATTTGACGGCCTATTTAACTTCTGTCAGGCCTCCTCTGGAGGATCCATTGGCGCCGCCGTTAAACTTAACCGTGGAGACGCTGACATCGCTATCAATTGGGCTGGTGGTTTGCACCATGCCAAGAAGGCTGAAGCTTCTGGATTTTGTTATGTTAACGACATTGTTCTCGGTATCCTCGAGCTTCTCAAGGCTCATCGGCGCGTGCTGTATGTTGACATTGATGTTCATCATGGTGATGGTGTTGAGGAGGCCTTTTACACTACTGATAGAGTGATGACTGTGTCTTTTCATAAGTTTGGGGACTTTTTCCCTGGCACTGGACACATCAGAGACATTGGAGTGGGCTCTGGAAAGAATTATGCTGTCAATGTCCCATTAAATGATGGATTGGACGATGACAGTTTCCGGGGTTTGTTTCGAACCATCATTCAAAAAGTCATGGAGGTTTATCAGCCTGATGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCCGGTGACAGATTGGGTTGCTTCAACTTAACTGTGAAAGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTCTGATGGTTTTGGGTGGAGGAGGATATACGATTCGGAACGTTGCTCGTTGTTGGTGTTATGAGACGGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAGTATTTTGGCCCAGATTATACTCTTCATGTTGATCCAAGCAAGATGGACAATCTAAACACACCCCATGATATGGAAAAAATAAGGAACATACTGCTAGAACAGATTTCCAGACTTCCCCATGCTCCCAGCGTGTCGTTTAGCACAACACCATCAGGCATCCCAGTTCCGGAAGAGGTGGAAGAGGACATGGATAGGAGAACAAAACCTCGCATATGGAGCGGTGAAGATTGTGAGTCTGATCACGACGATGAAAAGGCTGAGTCAAAGTGTTCAAACATAAATACCAATATGAGGGATTATGCAGATGACATGGAAGAAGATAAGCCAGAAGGGCATCCACCATCCTGTTGCTGA 1401 0.4704 MGMGDESGIALPSSGQDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRHMEINRPFLAGPDDIRLFHSPDYVDFLASVSPETLSEAAFSRQLKRFNVGEDCPVFDGLFNFCQASSGGSIGAAVKLNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKAHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDIGVGSGKNYAVNVPLNDGLDDDSFRGLFRTIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLTVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVDPSKMDNLNTPHDMEKIRNILLEQISRLPHAPSVSFSTTPSGIPVPEEVEEDMDRRTKPRIWSGEDCESDHDDEKAESKCSNINTNMRDYADDMEEDKPEGHPPSCC 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1058 466 MobiDBLite consensus disorder prediction 392 466 - -
Lal19g1058 466 PRINTS Histone deacetylase signature 42 59 IPR003084 GO:0004407|GO:0016575
Lal19g1058 466 PRINTS Histone deacetylase signature 75 93 IPR003084 GO:0004407|GO:0016575
Lal19g1058 466 PRINTS Histone deacetylase signature 108 125 IPR003084 GO:0004407|GO:0016575
Lal19g1058 466 PRINTS Histone deacetylase signature 129 149 IPR003084 GO:0004407|GO:0016575
Lal19g1058 466 PRINTS Histone deacetylase signature 170 186 IPR003084 GO:0004407|GO:0016575
Lal19g1058 466 PRINTS Histone deacetylase signature 229 242 IPR003084 GO:0004407|GO:0016575
Lal19g1058 466 PRINTS Histone deacetylase signature 246 264 IPR003084 GO:0004407|GO:0016575
Lal19g1058 466 SUPERFAMILY Arginase/deacetylase 21 386 IPR023696 -
Lal19g1058 466 PIRSF HDAC_I_euk 6 462 IPR003084 GO:0004407|GO:0016575
Lal19g1058 466 PANTHER HISTONE DEACETYLASE 5 449 - -
Lal19g1058 466 MobiDBLite consensus disorder prediction 448 466 - -
Lal19g1058 466 PRINTS Histone deacetylase superfamily signature 151 174 IPR000286 -
Lal19g1058 466 PRINTS Histone deacetylase superfamily signature 183 198 IPR000286 -
Lal19g1058 466 PRINTS Histone deacetylase superfamily signature 268 278 IPR000286 -
Lal19g1058 466 Pfam Histone deacetylase domain 40 331 IPR023801 -
Lal19g1058 466 CDD HDAC_classI 26 333 - -
Lal19g1058 466 MobiDBLite consensus disorder prediction 407 438 - -
Lal19g1058 466 PANTHER HISTONE DEACETYLASE 5 449 - -
Lal19g1058 466 Gene3D Histone deacetylase domain 19 394 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1058 Lal-Chr19 14348680 14354892 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1058 K06067 - gmx:100807923 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1058 19 14348680 14354892 Lal19g1058 19 14348680 14354892 ECH
Lal14g1500 14 15903333 15907487 Lal19g1058 19 14348680 14354892 LSH
Lal19g1058 19 14348680 14354892 Lal4g0817 4 6883627 6897887 PCT
Lal4g0817 4 6883627 6897887 Lal19g1058 19 14348680 14354892 PCT