Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1500 ATGGGTATGGGGGAGGAAAGTGGTGCTTCGCTACCATCTTCTGGTGCAGACGCAAAGAAACGCCGGGTGACCTACTTCTACGAACCCACCATCGGCCATTACTACTACGGCCAGGGTCACCCTATGAAGCCCCACCGAATCCAAATGGCCCACAACCTCATTGTCCACTACTCCCTCCACCGCCACTTGGAGATCAACCGTCCCTTCCTTGCCGCCGCCGAAGACATCCGCCGCTTCCACTCCCCTGACTACGTCGATTTCCTCGCCTCCGTCTCCCCCGAAACTATCTCCGAGATTGCCTTCTCCCGCCAACTCAAGCGCTTCAATGTTGGCGAGGATTGCCCTGTCTTCGACGGCCTCTTCAACTTCTGTCAGGCCTCCGCTGGAGGCTCCATTGGCGCCGCCGTCAAGCTCAACCGTGGCGACGCTGATATCGCTATCAATTGGGCTGGCGGCTTGCACCATGCTAAGAAGTCTGAAGCTTCTGGGTTTTGTTATGTCAACGACATTGTTCTCGGTATCCTTGAGCTTCTCAAGGTTCATAGGTCTCTTCCTGGATATATTGTTCTCATTATCTGCTTTGTTACTGGGAAGCGTGTGCTGTATGTTGACATTGATGTTCACCATGGTGATGGTGTTGAGGAAGCTTTTTACACAACCGATAGAGTGATGACTGTGTCTTTTCATAAGTTTGGGGACTTTTTTCCTGGCACTGGACACATCAGAGACATTGGGGTGGGCCCAGGAAAGAATTATGCTCTCAATGTCCCATTAAATGATGGATTGGATGATGACAGTTTCCGGGGCTTGTTTCGAACCATCATTCAAAAAGTCATGGAGGTTTATCAGCCGGATGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGACAGATTGGGTTGCTTCAACTTGACTGTGAAAGGTCATGCAGATTGTCTTCGATTCCTTAGATCTTTCAATGTTCCTCTGATGGTTTTGGGTGGGGGAGGATATACGATTCGGAACGTTGCTCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAGTATTTTGGCCCAGATTATACTCTCCATGTCGATCCAAGCAAAATGGACAACCTAAACACACCTAAGGATATGGAAAAAATAAGGAGCATACTGCTAGAACAGATTTCCAGACTTCCCCATGCTCCCAGTGTGTCTTTTTACACAACACCTTCAACCATCCCGGTCCCAGAAGAGGTGGAAGAGGACATGGATAGAAGAACAAAACCTTGCATATGGAGGGGTGATGATTGTGATTCTGATCACGAAGGTGAAAAGGCTGATTTATAG 1362 0.4838 MGMGEESGASLPSSGADAKKRRVTYFYEPTIGHYYYGQGHPMKPHRIQMAHNLIVHYSLHRHLEINRPFLAAAEDIRRFHSPDYVDFLASVSPETISEIAFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRSLPGYIVLIICFVTGKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDIGVGPGKNYALNVPLNDGLDDDSFRGLFRTIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLTVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVDPSKMDNLNTPKDMEKIRSILLEQISRLPHAPSVSFYTTPSTIPVPEEVEEDMDRRTKPCIWRGDDCDSDHEGEKADL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1500 453 PANTHER HISTONE DEACETYLASE 7 450 - -
Lal14g1500 453 CDD HDAC_classI 26 349 - -
Lal14g1500 453 PANTHER HISTONE DEACETYLASE 6 7 450 - -
Lal14g1500 453 PRINTS Histone deacetylase superfamily signature 151 174 IPR000286 -
Lal14g1500 453 PRINTS Histone deacetylase superfamily signature 284 294 IPR000286 -
Lal14g1500 453 Pfam Histone deacetylase domain 40 347 IPR023801 -
Lal14g1500 453 SUPERFAMILY Arginase/deacetylase 21 402 IPR023696 -
Lal14g1500 453 Gene3D Histone deacetylase domain 19 410 IPR037138 -
Lal14g1500 453 PIRSF HDAC_I_euk 6 451 IPR003084 GO:0004407|GO:0016575
Lal14g1500 453 PRINTS Histone deacetylase signature 42 59 IPR003084 GO:0004407|GO:0016575
Lal14g1500 453 PRINTS Histone deacetylase signature 75 93 IPR003084 GO:0004407|GO:0016575
Lal14g1500 453 PRINTS Histone deacetylase signature 108 125 IPR003084 GO:0004407|GO:0016575
Lal14g1500 453 PRINTS Histone deacetylase signature 129 149 IPR003084 GO:0004407|GO:0016575
Lal14g1500 453 PRINTS Histone deacetylase signature 170 186 IPR003084 GO:0004407|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1500 Lal-Chr14 15903333 15907487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1500 K06067 - gmx:100807923 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1500 14 15903333 15907487 Lal14g1500 14 15903333 15907487 ECH
Lal14g1500 14 15903333 15907487 Lal19g1058 19 14348680 14354892 LSH
Lal14g1500 14 15903333 15907487 Lal4g0817 4 6883627 6897887 PCT
Lal4g0817 4 6883627 6897887 Lal14g1500 14 15903333 15907487 PCT