Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0384 ATGGGAAGAATTTCAAGGATTGGAAGTTATGCAATTGCCTCTTCAATACAAGAAAACCAAGAACAACAACAAACTTGTATTACCTGCACCACTTTTAACATTCTTGCTCCAATATACAAGCGCCTTAACCATGAGAGTAGCCGGGAAAGCGAGTTTAGAGCAAAATGGTTAGCCAGGAACCATAGGATATTGGATTGGTTGTTGTATGAGAGGTCTTCCATTATCTGTCTTCAGGAATTTTGGGTTGGAAATGAGGAGCTTGTTAATTTGTATGAGAAGAGACTTGGTGATGCTGGTTATATTAGTTTCAAGCTTGGAAGAACTAACAACCGCGGTGATGTTTTGTTTCCCAATTCTTCTGGAATTTTATGTACCAATGCTAACATGGAGTTTCCATTGGAGTATATAGGCCTTCTGATAGCAGTTCAAAAGGAATGTTTTAAAGTTATTAACTATAAGGAGTTGCACTTCAATGATTGTGGTGATCGTGTAGCTCAATTGTTACATGTTGAGTTAGCTTTTCCATTTACACAAGGCATAGAAGTTCTTATTGTCAACACTCACCTACTATTTCCTCATGATTCAAGTCTATGCCTTGTACGACTCAATCAGGTCTACAAGATGCTTCAATATGTGGAATCTTATCAGAAAGAGAACCAACTTAAGCCTTTACCGATTATGCTATGCGGTGACTGGAATGGAAGCAAACGTGGAAATATTTACAAGTTCCTAAGGTCTCAGGGGTTTGTATCATCATATGATACAGCACACCACTACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCGTAATCATCGAGGAAATATATGTGCTGTTGATTTTATATGGCTTCTAAATCCTGACAAATATAGAAAACTGCTTAAAGCAAGTTGGAGTGAAGCAGTATTTGGCATGTTCAAGTATCTATTGCGGAGAGCTTCACTGACAGAGAAAGATGCATTCACCCTTCTTAAGGCTGATAATGAAGATTTTATTACCTATTCTGGTTTCTGTGAAGCACTTCGGCAGCTTAATTTAACTGGTCATTGCCATGGCCTAAGTATTGATGAGATTAAGGACTTGTGGGTCCAAGCAGATAATGATGGAAATGGTGTTCTTGATTACAAAGAATTTCTGCAGCAAATTTGGAACCAAAAAGGGTCAGATGAAAGAGATGACAACAATAATGAGCATGTGGATGATAGTGAAGAGGAAACAATTGGTTTTAGTGTAAAAAAAGCAGTTTTGTTCCCTCCTGAGGTAGAGAAAGGTAGATGGCCTGAAAACTACTCCCTTTCTGATCATGCAAGACTCACTGTAGCATTCTCAACAATAAAAATGAGATGCTCACAAATGATTTCTCAAAATGCTTGA 1377 0.3834 MGRISRIGSYAIASSIQENQEQQQTCITCTTFNILAPIYKRLNHESSRESEFRAKWLARNHRILDWLLYERSSIICLQEFWVGNEELVNLYEKRLGDAGYISFKLGRTNNRGDVLFPNSSGILCTNANMEFPLEYIGLLIAVQKECFKVINYKELHFNDCGDRVAQLLHVELAFPFTQGIEVLIVNTHLLFPHDSSLCLVRLNQVYKMLQYVESYQKENQLKPLPIMLCGDWNGSKRGNIYKFLRSQGFVSSYDTAHHYTDADAHKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLLRRASLTEKDAFTLLKADNEDFITYSGFCEALRQLNLTGHCHGLSIDEIKDLWVQADNDGNGVLDYKEFLQQIWNQKGSDERDDNNNEHVDDSEEETIGFSVKKAVLFPPEVEKGRWPENYSLSDHARLTVAFSTIKMRCSQMISQNA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0384 458 Pfam Endonuclease/Exonuclease/phosphatase family 31 251 IPR005135 GO:0003824
Lal22g0384 458 SUPERFAMILY DNase I-like 18 257 IPR036691 -
Lal22g0384 458 ProSitePatterns EF-hand calcium-binding domain. 367 379 IPR018247 -
Lal22g0384 458 Gene3D Endonuclease/exonuclease/phosphatase 9 454 IPR036691 -
Lal22g0384 458 MobiDBLite consensus disorder prediction 387 407 - -
Lal22g0384 458 SUPERFAMILY EF-hand 319 386 IPR011992 -
Lal22g0384 458 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 1 116 - -
Lal22g0384 458 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 137 451 - -
Lal22g0384 458 ProSiteProfiles EF-hand calcium-binding domain profile. 354 389 IPR002048 GO:0005509
Lal22g0384 458 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 137 451 - -
Lal22g0384 458 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 116 - -
Lal22g0384 458 Gene3D - 289 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0384 Lal-Chr22 2442948 2446304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0384 2 347 EF-hand Containing Proteins AT5G54130 72.727 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0384 - - gmx:100779780 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0384 22 2442948 2446304 Lal4g0549 4 3981687 3990035 PCT
Lal4g0549 4 3981687 3990035 Lal22g0384 22 2442948 2446304 PCT