Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0545 ATGTCTCCAGGTCCAATTGTTGAAGCAGCCACCGAACCCGTAACCGACCCACAAATCCTCTCTTCCGAGGACACTACCCTTAAAAATAAACCTCTGCCACAGGAAAATTATGATTCTCCTCTCGTCGAAGATGTCAAGGATGATGAAAAGGATGAACCTGATGATGACGACGACGATGACGATGATGTCGACGACGGTGCTCAAGATGGTACTGAGGGTTCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTGGGTCTGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATGTTCTCTTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCTGAAACCTATGTCATATTTGGGGAGGCAAAGATAGAGGACTTGAGTTCTCAGTTGCAGAACCAAGCTGCGCAGCAGTTCAGGATTCCGGATTTGCAATCACCAACGGCAAAACCAGATCATGGTGCTGCAGGAGCACTTCCTGATGAGGAAGAAGAGGAGGTTGATGAAACTGGTGTGGCTCCCCACGACATTGATTTGGTCATGACACAGGCGGGAGTGTCAAGAAGCAAGGCCGTTAAGGCTCTCAAGACTCACGATGGGGACATTGTCGGTGCCATCATGGAGCTCACCACTTAA 669 0.4694 MSPGPIVEAATEPVTDPQILSSEDTTLKNKPLPQENYDSPLVEDVKDDEKDEPDDDDDDDDDVDDGAQDGTEGSKQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNVLFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQNQAAQQFRIPDLQSPTAKPDHGAAGALPDEEEEEVDETGVAPHDIDLVMTQAGVSRSKAVKALKTHDGDIVGAIMELTT 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0545 222 Gene3D - 183 220 - -
Lal4g0545 222 MobiDBLite consensus disorder prediction 15 33 - -
Lal4g0545 222 MobiDBLite consensus disorder prediction 155 185 - -
Lal4g0545 222 MobiDBLite consensus disorder prediction 47 67 - -
Lal4g0545 222 Gene3D - 86 139 IPR038187 -
Lal4g0545 222 SMART NAC_2 80 136 IPR002715 -
Lal4g0545 222 Pfam NAC domain 80 135 IPR002715 -
Lal4g0545 222 ProSiteProfiles NAC A/B domain profile. 77 142 IPR002715 -
Lal4g0545 222 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 24 221 IPR016641 GO:0005854
Lal4g0545 222 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 24 221 - -
Lal4g0545 222 MobiDBLite consensus disorder prediction 68 86 - -
Lal4g0545 222 MobiDBLite consensus disorder prediction 1 86 - -
Lal4g0545 222 CDD UBA_NAC_euk 185 221 - -
Lal4g0545 222 Pfam HYPK UBA domain 182 221 IPR044034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0545 Lal-Chr4 3963474 3966179 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0545 K03626 - gmx:100499943 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0545 4 3963474 3966179 Lal4g0545 4 3963474 3966179 ECH
Lal21g0601 21 4521517 4526826 Lal4g0545 4 3963474 3966179 LSH
Lal17g0629 17 4469799 4471936 Lal4g0545 4 3963474 3966179 LSH