Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0601 ATGGGCCGGCCCAAGAAACATGAAAACCAGAAGCAGCATCGATTCGGTACTGAAACCAAATCCTCTCAGATCCTGAAAACCATGTCTCCCGGACCCGTCGTTGACACAACCACCGACGTTGAAACCGACCAACAACTTCCCTCCGTTGATGATGTCACAACCCATAAGAAGAAACCTCAGCCGCAGGAGGACGATGCTCTTGTTGTTGAGGACGTGAAAGATGATGACAATGACGACGATGAAGATGATGATGATGATGACAAGGAAGATGGTGCTCAAGGTTCTAGTGAGGGGTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTAGAAAAGCAATGTTGAAGCTTGGACTGAAACCTGTTACTGGTGTTAGCAGAGTCACAATCAAGAGAACAAAAAATGTCCTATTTTTCATCTCAAAACCCGATGTCTTCAAGAGTCCACATTCTGAGACCTATGTCATATTCGGTGAGGCAAAAATAGAAGACTTGAGCTCTCAGTTGCAGTCACAAGCAGCTCAGCAGTTCAGGATGCCAAATATGGGATCTATATCGGCAAAACCAGATGAAGTTTCTGCAGCTGAAGGAGCCCAACCTGATGACGAAGAAGAGGAAGTTGATGAAACTGGTGTGGCTCCCCACGACATTGATTTGGTCATGACACAGGCGGGGGTTGCACGAAACAAGGCCGTCAAGGCTCTGAAAAATCACGACGGGGATATTGTTATGTTGAGTGAAAAAAGCATCACCATGTCTCCAGGTCCAGTTGTTGAACCCGCCGCCGTGACCGCAACCGTTGAAGAGATTCTCTCCGCCGAGGAAACTACACTCAATAAGAAACCTCTTCCACAGGAAGACGATGCTCCTGTCGTTGAGGACGTCAAGGATGATGATAAAGATGAAGCTTATGACGATGATAACGATGATGATGACGACGACGATGATGATGGCGCTTTAGGTGGTACCGAGGGTTCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTGGGGCTCAAACCAGTTACTGGTGTTAGCAGGGTCACAATCAAGAGAACCAAAAATGTTCTCTTTTTCATCTCAAAGCCCGATGTCTTCAAGAGTCCAAATTCTGAGACCTACGTCATATTTGGGGAGGCAAAGATAGAGGACTTGAGCTCTCAGTTGCAGAACCAAGCTGCTCAGCAGTTCAGGATGCCCGATATTCAATCACTGACAGCAAAACCAGATCATGGTGCTTCAGCTGCAGGCACACAACCTGATGATGAGGAAGAGGAGGTTGATGAAACTGGTGTGGCTCCTCACGACATTGATTTGGTCATGACACAGGCAGGAGTATCAAGAAGCAAGGCCGTTAAGGCTCTCAAGACTCATGACGGTGACATTGTTGGTGCCATAATGGAACTTACCACTTAA 1425 0.4681 MGRPKKHENQKQHRFGTETKSSQILKTMSPGPVVDTTTDVETDQQLPSVDDVTTHKKKPQPQEDDALVVEDVKDDDNDDDEDDDDDDKEDGAQGSSEGSKQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQSQAAQQFRMPNMGSISAKPDEVSAAEGAQPDDEEEEVDETGVAPHDIDLVMTQAGVARNKAVKALKNHDGDIVMLSEKSITMSPGPVVEPAAVTATVEEILSAEETTLNKKPLPQEDDAPVVEDVKDDDKDEAYDDDNDDDDDDDDDGALGGTEGSKQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNVLFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQNQAAQQFRMPDIQSLTAKPDHGASAAGTQPDDEEEEVDETGVAPHDIDLVMTQAGVSRSKAVKALKTHDGDIVGAIMELTT 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0601 474 Pfam HYPK UBA domain 209 241 IPR044034 -
Lal21g0601 474 Pfam HYPK UBA domain 434 473 IPR044034 -
Lal21g0601 474 ProSiteProfiles NAC A/B domain profile. 327 392 IPR002715 -
Lal21g0601 474 MobiDBLite consensus disorder prediction 289 317 - -
Lal21g0601 474 MobiDBLite consensus disorder prediction 50 67 - -
Lal21g0601 474 MobiDBLite consensus disorder prediction 273 336 - -
Lal21g0601 474 MobiDBLite consensus disorder prediction 16 49 - -
Lal21g0601 474 MobiDBLite consensus disorder prediction 1 112 - -
Lal21g0601 474 SMART NAC_2 330 386 IPR002715 -
Lal21g0601 474 SMART NAC_2 105 161 IPR002715 -
Lal21g0601 474 MobiDBLite consensus disorder prediction 185 210 - -
Lal21g0601 474 CDD UBA_NAC_euk 437 473 - -
Lal21g0601 474 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 272 473 - -
Lal21g0601 474 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 35 242 - -
Lal21g0601 474 Gene3D - 336 389 IPR038187 -
Lal21g0601 474 Gene3D - 111 164 IPR038187 -
Lal21g0601 474 MobiDBLite consensus disorder prediction 409 438 - -
Lal21g0601 474 Pfam NAC domain 105 160 IPR002715 -
Lal21g0601 474 Pfam NAC domain 330 385 IPR002715 -
Lal21g0601 474 ProSiteProfiles NAC A/B domain profile. 102 167 IPR002715 -
Lal21g0601 474 MobiDBLite consensus disorder prediction 194 209 - -
Lal21g0601 474 MobiDBLite consensus disorder prediction 68 91 - -
Lal21g0601 474 Gene3D - 435 472 - -
Lal21g0601 474 Gene3D - 210 242 - -
Lal21g0601 474 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 272 473 IPR016641 GO:0005854
Lal21g0601 474 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 35 242 IPR016641 GO:0005854
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0601 Lal-Chr21 4521517 4526826 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0601 K03626 - gmx:100499943 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0601 21 4521517 4526826 Lal21g0601 21 4521517 4526826 ECH
Lal21g0601 21 4521517 4526826 Lal4g0545 4 3963474 3966179 LSH
Lal17g0629 17 4469799 4471936 Lal21g0601 21 4521517 4526826 LSH