Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0629 ATGTCTCCAGGTCCCGTCGTTGACACACCCACCGATGTTGAACCCGAACAACAACTTCCAACCGTCGATGAAGTCACCATCCAGAAGAAGAAACCTCACTCACAGGAAGACGATGCTCCTGTTGTGGAGGATGTGAAAGATGATGACGGTGATGACGATGAGGATGAGGATGAAGATGACGATGATGACAAGGATGACGGTGCTCAAGGTTCGGGTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGCAATGTTGAAGCTTGGACTGAAACCCGTTACTGGTGTTAGCAGAGTCACAATCAAGAGAACAAAAAATGTCCTATTTTTCATCTCTAAACCTGATGTCTTCAAGAGTCCACATTCTGAGACCTATGTCATATTCGGGGAAGCAAAAATAGAAGACTTGAGCTCTCAGTTGCAGTCACAAGCAGCTCAGCAATTCAGGATGCCCGATTTGGCATCCGTAACGGCAAAACCAGATGAAGGTGCTGCAGCTGAAGGAGCACAACCTGATGATGAAGAAGAGGAGGTTGATGAAACTGGCGTGGCTCCCCATGACATTGATCTGGTCATGACACAGGCGGGAGTGGCAAGAAACAAAGCTGTCAAGGCTCTGAAGAATCATGATGGCGACATTGTTAGCGCCATCATGGAGCTCACAACTTAA 678 0.4764 MSPGPVVDTPTDVEPEQQLPTVDEVTIQKKKPHSQEDDAPVVEDVKDDDGDDDEDEDEDDDDDKDDGAQGSGEGSKQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQSQAAQQFRMPDLASVTAKPDEGAAAEGAQPDDEEEEVDETGVAPHDIDLVMTQAGVARNKAVKALKNHDGDIVSAIMELTT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0629 225 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 21 224 - -
Lal17g0629 225 Gene3D - 186 223 - -
Lal17g0629 225 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 21 224 IPR016641 GO:0005854
Lal17g0629 225 MobiDBLite consensus disorder prediction 160 186 - -
Lal17g0629 225 MobiDBLite consensus disorder prediction 170 185 - -
Lal17g0629 225 Pfam NAC domain 81 136 IPR002715 -
Lal17g0629 225 Pfam HYPK UBA domain 185 224 IPR044034 -
Lal17g0629 225 Gene3D - 87 140 IPR038187 -
Lal17g0629 225 MobiDBLite consensus disorder prediction 1 88 - -
Lal17g0629 225 SMART NAC_2 81 137 IPR002715 -
Lal17g0629 225 MobiDBLite consensus disorder prediction 41 67 - -
Lal17g0629 225 ProSiteProfiles NAC A/B domain profile. 78 143 IPR002715 -
Lal17g0629 225 MobiDBLite consensus disorder prediction 26 40 - -
Lal17g0629 225 CDD UBA_NAC_euk 188 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0629 Lal-Chr17 4469799 4471936 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0629 K03626 - gmx:100499943 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0629 17 4469799 4471936 Lal21g0601 21 4521517 4526826 LSH
Lal17g0629 17 4469799 4471936 Lal4g0545 4 3963474 3966179 LSH