Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0504 ATGATGGAAAGGTCTAGATCTAAGAGAAACTATTACTATGATCAAGACTATGATTCTGAAACCTTAGCTCGGACAAGGCCTCGCTATAACCACCACTATTCCAATCGCCACCGTGGCGCCTCCGGCGGCCGCGGTGGCCGCCACATTAAGCCACAGCAGGACGTGCCGGTAACGGTTACCACCAGTTACCGCATTTTGTGCCATGATTTAAGGGCCGGCAGCGTGATCGGGAAGTCCGGCAGCATTATTAAGTCAATCCGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGCTGATCCCGGGAGATGAGGAGCGTATCATTGAGATTTCGGACACGCGCCGCCGCGACCCAGGGGGGAGAATGCCGTCGTTCTCGCCGGCGCAGGAGGCGCTGCTCCTCATCCACGATAGGATTCTGGAGAGTGACGCGGCGTACCGGGTGACTGAGGAGGAGGAAGATGAGTATGGTGGTGGCGGTGGTGGTGGGAGGAACCGGGACCGGGTGGCGATGAGGTTGGTGGTGTCAAGAATGCATGTTGGGTGTTTGTTGGGGAAAGGAGGAAAGATTATTGAACAAATGAGAATGGAAACAAAGACACAAATTAGGATACTCCCTAGAGATCACAACCTACCTCGTTGTGTTTCAATGTCTGAAGAAATTGTTCAGGTTACAGGTGATGCAAATGCTGTGAAGAATGCTCTAGAAGTGATATCATCACGGTTGAGGGAGAGCCAGCATCGTGACCGCAGTCATTTCCATGGACGTGGACATTCACCAGAGCGTTTTTTCCCACCTGATGATGATTATATTCCTCATGGTGGATCTCGTAGATCGTCTGTGGAGGGGGCTGCTTTTGGATCGCGAATATCCACTACTAATGCCAGAAACAATAATTTGTCATCAGGATATGCAATGGAGTTAGGAGCTGCTCCTTCTGCTATTGATGCTCAGCCCTTCTACGGAGAGGACCTAGTTTTCCGTATACTTTGTCCAGTTGAGAAAGTTGAACGTATCATCGGGGAGTCAGATGGAATTGTAGGTTTTCTTCAGAATGAAGTTGGTGTTAATATCAAGGTCGCTGATCCAATTGGTGGTTCAGAGGAGCAGATAATTGTCATTACTTCAGAGGAGGGTCCGGATGATGAGTTGTTCCCTGCTCAGGAAGCTTTGTTGCATATTCAAACTCACATTGTCGATCTTGTTCTGGATAAGAACAATACTATAACCACCAGGCTTGTTGTACCATCTAGCGATATTGAATGCTTAGATGGAAAAGATGCATCACTATCAGAAATAACGAGGTCGACTGGTGCTAATATTCAAATTCTGCCGAGAGAAGAACGACCTCTCTGTGTTGCAAAGACTGATGAGTTAGTACAGATTGTAGGAGAAATAAAAGCAGCCAGAGATGCTGTTGTTGAGGTGACATCAAGATTAAGAAGTTACTTGTATAAGGATTTCATTCAAAGGGACACAGTACCACCATCGGCCCCCTTATCGAGCATGGAGGCATCATCTTCCAATACTACAGCTCCAACTATGGAAATGCCCACAACCTATCAGAATGTGCAAACCGTGGCAGCAGCAGTTCTGCCATCAAAGAAGGAAATTGGAGGATCTAGCACTGATGTGGGAAAGCAGAAAGACAATGAGCGTCGTGATGATGTGCCGGGTAGTTTAAATAGAATCACTGTGCCGCTTGTGACAAGGAGCACTCTTGAAGTTGTTATACCAGAGTATGCAGTTCTAAAGCTTATAGCAAGATCCAAAAGCAAGCTAGCACAGATAAGTGAGTTGTCGGGAGCCAATGTAACGCTTGTAGAGGATAGAGCAGATGTGACGGAGAAAATCATTCAGATATCTGGCACTCCAGAGCAGGCAGAGAGAGGCCAGAGCTTACTCCAGGGGTTTATTTTGAGCAGTAAGCCCTCTGTCAATTTCACAAGAAGATGGCCCTTAAGTGATGGACATGCCGAAACCTGCAGTGCAGGGGAGCAAATGTTGGCTTACCCTGATGGTTGTAGACATGATTTCGGTTCTGAGGAGAATGCTTCCATTATATATGCAACCTTGGCCATCGATAAGGAGTTGCAACCTGACAAAGTGAAACGACAGATGAAAGTTTCCGAAGGAAAGCTTTCAGTGAACTTTGAGGCAACAGAAGCCAGATTTCTTCGAGCATCGTTCAGTGCTTTTGTAGATGTCCTTATATTAGCCACAAAAACAATCGAAGAATTTGGTCAAGGAATAGAGTTATGA 2262 0.4704 MMERSRSKRNYYYDQDYDSETLARTRPRYNHHYSNRHRGASGGRGGRHIKPQQDVPVTVTTSYRILCHDLRAGSVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPGGRMPSFSPAQEALLLIHDRILESDAAYRVTEEEEDEYGGGGGGGRNRDRVAMRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDANAVKNALEVISSRLRESQHRDRSHFHGRGHSPERFFPPDDDYIPHGGSRRSSVEGAAFGSRISTTNARNNNLSSGYAMELGAAPSAIDAQPFYGEDLVFRILCPVEKVERIIGESDGIVGFLQNEVGVNIKVADPIGGSEEQIIVITSEEGPDDELFPAQEALLHIQTHIVDLVLDKNNTITTRLVVPSSDIECLDGKDASLSEITRSTGANIQILPREERPLCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYKDFIQRDTVPPSAPLSSMEASSSNTTAPTMEMPTTYQNVQTVAAAVLPSKKEIGGSSTDVGKQKDNERRDDVPGSLNRITVPLVTRSTLEVVIPEYAVLKLIARSKSKLAQISELSGANVTLVEDRADVTEKIIQISGTPEQAERGQSLLQGFILSSKPSVNFTRRWPLSDGHAETCSAGEQMLAYPDGCRHDFGSEENASIIYATLAIDKELQPDKVKRQMKVSEGKLSVNFEATEARFLRASFSAFVDVLILATKTIEEFGQGIEL 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0504 753 MobiDBLite consensus disorder prediction 542 558 - -
Lal4g0504 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 564 641 IPR036612 GO:0003723
Lal4g0504 753 ProSiteProfiles Type-1 KH domain profile. 60 132 - -
Lal4g0504 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 60 111 IPR036612 GO:0003723
Lal4g0504 753 MobiDBLite consensus disorder prediction 537 558 - -
Lal4g0504 753 MobiDBLite consensus disorder prediction 32 51 - -
Lal4g0504 753 CDD KH-I 573 636 - -
Lal4g0504 753 CDD PCBP_like_KH 171 239 - -
Lal4g0504 753 SMART kh_6 59 140 IPR004087 GO:0003676
Lal4g0504 753 SMART kh_6 167 243 IPR004087 GO:0003676
Lal4g0504 753 SMART kh_6 407 481 IPR004087 GO:0003676
Lal4g0504 753 SMART kh_6 323 396 IPR004087 GO:0003676
Lal4g0504 753 SMART kh_6 570 640 IPR004087 GO:0003676
Lal4g0504 753 ProSiteProfiles Type-1 KH domain profile. 168 238 - -
Lal4g0504 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 320 382 IPR036612 GO:0003723
Lal4g0504 753 Pfam KH domain 172 239 IPR004088 GO:0003723
Lal4g0504 753 Pfam KH domain 573 636 IPR004088 GO:0003723
Lal4g0504 753 Pfam KH domain 410 475 IPR004088 GO:0003723
Lal4g0504 753 Pfam KH domain 63 111 IPR004088 GO:0003723
Lal4g0504 753 ProSiteProfiles Type-1 KH domain profile. 324 391 - -
Lal4g0504 753 Pfam Transcription factor Pcc1 678 745 IPR015419 -
Lal4g0504 753 Gene3D K Homology domain, type 1 169 247 IPR036612 GO:0003723
Lal4g0504 753 Gene3D - 323 485 - -
Lal4g0504 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 400 488 IPR036612 GO:0003723
Lal4g0504 753 Gene3D K Homology domain, type 1 570 641 IPR036612 GO:0003723
Lal4g0504 753 Gene3D - 675 750 - -
Lal4g0504 753 Gene3D K Homology domain, type 1 58 168 IPR036612 GO:0003723
Lal4g0504 753 ProSiteProfiles Type-1 KH domain profile. 571 635 - -
Lal4g0504 753 MobiDBLite consensus disorder prediction 246 266 - -
Lal4g0504 753 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 4 525 - -
Lal4g0504 753 CDD PCBP_like_KH 62 136 - -
Lal4g0504 753 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 4 525 - -
Lal4g0504 753 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 165 249 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0504 Lal-Chr4 3622305 3631998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0504 K21444 - gmx:100782999 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0504 4 3622305 3631998 Lal4g0504 4 3622305 3631998 ECH
Lal17g0578 17 4107819 4117416 Lal4g0504 4 3622305 3631998 LSH
Lal21g0572 21 4246737 4252825 Lal4g0504 4 3622305 3631998 LSH