Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0572 ATGGAAAGATCTAGATCTAAGAGGAACTACTACTATGACCAGAACTATGATTCTGAAACCTTAGCTCGGACAAGGCATCGCAGTAACTACCACTACTCTAACCGCCACCGTGGTGCTTCCGGTGGCGGTGGTGGACGCCATATTAAGACTCAGCAGGACGTGCCGGTAACGGTTACCACCAGCTACCGGATTCTGTGCCATGACTTGAGGGCCGGCGGCGTGATCGGGAAGTCCGGTAGTGTCATTAAGTCAATCCGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGCTGATCCCGGGTGATGAGGAGCGTATCATTGAGATTTCGGACACGCGCCGCCGTGACCCGGAGGGGAGAATGCCGGCGTTCTCTCCGGCGCAGGAGGCGCTGCTACTTATTCATGAGAGGATTGTGGAGAGTGACGCGGCGTACAGGGTGGCGGAGGAGGAGGAGGATTATGGTGGTGGTGGTGGTGGGAGGAACCGGGACCGAGTGGCATCGAGGTTGGTGGTTTCGAAAATGCATGTTGGGTGTTTGTTGGGGAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAAACAAAGACACAAATTAGGATACTCCCTAGAGATCACAACCTACCTCGTTGTGTTTCAATGTCTGAAGAAATTGTTCAGGTTACCGGTGATGTAAATGCTGTAAAGAATGCTCTCGAAGTCATATCATCACGGTTGAGGGAGAGCCAGCATCGTGACCGCAGCCATTTCCATGGACGTGGACATTCACCAGAGCGTTTTTTCTCAAATGATGATGATTATATTCCTCACGGTGGATCTCGTAGATCGTCTGTGGAAGAGGCTGCTTTTGGATCACGAGGATCTACTACCATTGCCCGAAATAATAACCATCTCTCATTAGGTTATGCAACGGAGTCAGGGGCTGCTCCTGTGGCTAATGATGTTCGGCCTTTCTATGGAGAGGACCTAGTTTTCCGAGTACTTTGCCCAGTTGAGAAAGTTGATCGTATCATTGGGGAATCAGATGGAATTGTAGAGTTTCTTCAGAATGAAGTTGGTGTTGATATTAAGGTCACTGATCCCATTGGTGGTTCAGAGGAGCGGATAATTATCATTACTTCAGAGGAGGGTCCAGATAATGAGCTCTTCCCAGCTCAGGAAGCTTTGTTGCATATTCAAACTCGCATTGTCGATCTTGTTCTAGATAATGACAGTACTATAACCACCAGACTTGTCGTCCCATCTAACGACATTGAATGCTTAGATGGAAAAGATGCATCACTATTGGAAATAAAGAGGTTGACTGGTGCTAATATTCAAATTCTGCCTAGAGAAGAACGACCTCTCTGTGTTGCAAAGACTGATGAGTTATTACAGATTGTAGGAGAAATAAAAGCAGCCCGAGATGCTGTTGTTGAGGTGACATCAAGATTAAGAAGTTACTTGTATAGGGATTTCATTCAAAGGGACACAGTACCGCCATCGGCCCCCTTATCTAGCGTCGAGGCATCTTCTTCCAATACTATAGCTCCAGTTATTGAAACATCCACAGCCTATCAGAATGTGCAAACTGTGGCACCAGCAGTTCTACCATCGAAGAAGGAAACTGGAGGATCCAGCACGGAGGTAGGAAAGCAGAAAGACAATGACCGTCGGGATGATGTGCTGAGTGGTTTAAATAGGATCACCATGCCGCTTGTCACAAGGAGCATTCTTGAAGTTGTTATACCGGAGTATGCAGCTCCTAAGCTTATAGCAAGATCCAAAAGCAAGCTTGCACAGATAAGTGAGTTGTCGGGAGCGAATGTAACCCTTGTAGAGGATAGACCAGATGTAACAGAGAAAATTATTCAGCTCTCTGGTACTCCAGAACAGGCAGAAAGAGCCCAGAGCTTGCTCCAAGGATTTATTTTGAGCACACAAGAAGATGACCCTTAA 1938 0.4742 MERSRSKRNYYYDQNYDSETLARTRHRSNYHYSNRHRGASGGGGGRHIKTQQDVPVTVTTSYRILCHDLRAGGVIGKSGSVIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPAFSPAQEALLLIHERIVESDAAYRVAEEEEDYGGGGGGRNRDRVASRLVVSKMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVISSRLRESQHRDRSHFHGRGHSPERFFSNDDDYIPHGGSRRSSVEEAAFGSRGSTTIARNNNHLSLGYATESGAAPVANDVRPFYGEDLVFRVLCPVEKVDRIIGESDGIVEFLQNEVGVDIKVTDPIGGSEERIIIITSEEGPDNELFPAQEALLHIQTRIVDLVLDNDSTITTRLVVPSNDIECLDGKDASLLEIKRLTGANIQILPREERPLCVAKTDELLQIVGEIKAARDAVVEVTSRLRSYLYRDFIQRDTVPPSAPLSSVEASSSNTIAPVIETSTAYQNVQTVAPAVLPSKKETGGSSTEVGKQKDNDRRDDVLSGLNRITMPLVTRSILEVVIPEYAAPKLIARSKSKLAQISELSGANVTLVEDRPDVTEKIIQLSGTPEQAERAQSLLQGFILSTQEDDP 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0572 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 400 486 IPR036612 GO:0003723
Lal21g0572 645 CDD KH-I 571 634 - -
Lal21g0572 645 Gene3D K Homology domain, type 1 58 141 IPR036612 GO:0003723
Lal21g0572 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 168 246 IPR036612 GO:0003723
Lal21g0572 645 MobiDBLite consensus disorder prediction 243 267 - -
Lal21g0572 645 CDD PCBP_like_KH 169 236 - -
Lal21g0572 645 MobiDBLite consensus disorder prediction 530 554 - -
Lal21g0572 645 Gene3D K Homology domain, type 1 163 244 IPR036612 GO:0003723
Lal21g0572 645 ProSiteProfiles Type-1 KH domain profile. 569 633 - -
Lal21g0572 645 SMART kh_6 405 479 IPR004087 GO:0003676
Lal21g0572 645 SMART kh_6 58 139 IPR004087 GO:0003676
Lal21g0572 645 SMART kh_6 568 638 IPR004087 GO:0003676
Lal21g0572 645 SMART kh_6 164 240 IPR004087 GO:0003676
Lal21g0572 645 SMART kh_6 321 394 IPR004087 GO:0003676
Lal21g0572 645 Pfam KH domain 62 110 IPR004088 GO:0003723
Lal21g0572 645 Pfam KH domain 325 375 IPR004088 GO:0003723
Lal21g0572 645 Pfam KH domain 572 634 IPR004088 GO:0003723
Lal21g0572 645 Pfam KH domain 169 236 IPR004088 GO:0003723
Lal21g0572 645 CDD PCBP_like_KH 61 135 - -
Lal21g0572 645 ProSiteProfiles Type-1 KH domain profile. 165 235 - -
Lal21g0572 645 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Lal21g0572 645 Gene3D - 321 482 - -
Lal21g0572 645 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 529 - -
Lal21g0572 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 59 110 IPR036612 GO:0003723
Lal21g0572 645 MobiDBLite consensus disorder prediction 540 554 - -
Lal21g0572 645 Gene3D K Homology domain, type 1 569 640 IPR036612 GO:0003723
Lal21g0572 645 ProSiteProfiles Type-1 KH domain profile. 322 389 - -
Lal21g0572 645 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 529 - -
Lal21g0572 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 561 640 IPR036612 GO:0003723
Lal21g0572 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 315 377 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0572 Lal-Chr21 4246737 4252825 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0572 K21444 - gmx:100782999 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0572 21 4246737 4252825 Lal21g0572 21 4246737 4252825 ECH
Lal17g0578 17 4107819 4117416 Lal21g0572 21 4246737 4252825 LSH
Lal21g0572 21 4246737 4252825 Lal4g0504 4 3622305 3631998 LSH