Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0578 ATGATGGAAAGGTCTAGATCTAAGAGGAACTACTATTATAACCAAGACTATGATTCTGAAACCTTAGCTCGGACCAGACCTCGTTATAATTACCACTATTCCAATCGCTACCGTGACGCCTACGGCGGCGCCGGTGGACGCCACCTTAAACTGGACCATGACGCGCCGGTAACGGTTACCACCAGTTACCGCATTCTGTGCAATGAATTAAGGACCGGCGGCGTGATTGAGAAGTTCGGCGGTGTCATTAAGTCAATCCGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGTTGGTCCCGGGGGATGAGGAGCGTATAATCGAGATTTCGGACACGCGCCGCCGTGACGCTGATGGGAGAATGCCGATGTTCTCTCCGGCGCAGGAGGCTTTGCTCCTTATTAATGAGAAGATTCTGGAGAGTGACGTGGAATATAGGGTGGCGGCAGAGGAGGAGTATGGTGGTGGTGGGAGGAACTGGGACCGGGTAGCGGCGAGGTTGGTGGTTTCCAGAATGCATGTAGGGTGTTTGTTGGGTAAAGGAGGGAAAATTATTGAACAAATGAGGATGGAAACAAAGACACAAATTAGGGTACTCCCTAGAGATCACAACCTACCTCGTTGTGTTTCAATTTCTGAAGAAACTGTTCAGGTTTCTGGTGATGTAAATGCTGTAAAGAATGCTGTCAAAGTCATATCATCACGGTTGAGGGAGAGCCAGCATCGTGATCGGAGTCATTTCCATGGACATGGACATTCACAAGAGCATTTTCTCTCACCTGATGATAATTATAATCCTCATGGTGGACCTCTTAGATTGTCTGTGGAGGCGGCTGCTTTTGGATCACAAGGATCTGCTACCAATGCCAGAAACAATAACCATCCGTCATTAGGTGCTTATGTGGCTAATGATGCTCAGCCTTTCTATGGAGAGGACCTAGTTTTCCGTATAGTTTGTCCAGTTGAGAAAGTTGATCATATCATCGGGGAATCATATAGATTTGTAGAGTTTCTTCAGAATGATGTTGGCGTTGATATTAAGGTCACTGATCCTATTGGTGGTTCAGAGGAGCGGATAATTATCATTACTTCAGAGGAGGGTCCGGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGTTGCATATTCAAACTCGCATTGTCGATCTTGTTCTAGATAAGGGCAATACTATAACCACCAGGCTCGTCGTCCCATCTAGCGATATTGAATGCTTAGATGGAAAATATGCATCACTGTCTGAAATAAAGAGGTTGACTGGTGCTAATATTCAAATTTTGCCAAAAGAAGAACGACCTCTCTGTGTTGCAAAGACTGACGAGTTAATACAGATTGTCGGAGAAATAAAAGCAGCCCGGGATGCTGTTGTTGAGGTGACATCAAGATTAAGAAGTTACTTGTATAGGGATTTCATTCAAAGGGACACAGTACCACCATCAGCCTCCTTATCTAGGATGGAGGCATCTTCTTCCAATACTACAGCTCCAGCTACTGAAACATCCACAATCTATCAGAATTCGCAAACCGTGGCAACAGCAGTTCTACCATCAAAGATGGAAACTGGAGGATCTAGTGCTGAGGCAGGAAACCAGAAAGACAATCAGCTACGTGATAATGTGCCGATTGGTTTAAATAGGATCACCGTGCCACCTGTCACAAGGAGCATTCTTGAAGTTGTTCTACCAGAGTATGCAGTTCCAAGGCTTATAGCAAGATCCAAAAGCAAGCTTGCACAGATAAGTGAGTTGTCAGGTGCTAATGTAACCCTTGTAGAGGACAGACCAGATGTGACAGAGAAAATTATTCAGCTATCTGGTACTCCAGAACAGACAGAGAGAGCCCAGAGCTTGCTCCAGGGATTTATTTTGAGCATACTTTCGTTTGTTTCACTTTCTAAGGTTTCTGTTTTGTCTACAATGGAAGTTTCTTCCTTACTTCTTCCCAATCCTTCTCTCTCTTTCACTCCATTCAGGTCAAGTAAGGAACTTTCACATATGCTGTCACTGTATGAGTTGAAAAGCATGAATTTTTTCTCACTTAGTAATCAAATTCAAAAGCACAATTACATTATACCAATTAGGGCTATCTCTAAATTTTCACTTGCTGGGACAACTCCACGTAGTGATACTTATTCAGCTCCAAATCACTTTCCCAGAATGGGCAATTTTGAGAGAGAGTTGGAGGAATTATTTGATGAAGTCAAAAGATTGGTTAGGATAGGAAACAAAAATGATGCTATAGACTTGCTTAATGCAAATTATGAAGCGGTGAAAGAACGGTTGAATGGAACCACTAAAGGTATAGAGGAAGCTGCAATTCTCGATGTTTTAGCACTCGGTTATTTGGCTGTTGGGGACTTCAAGTTTGTTGATTCTCTCTTGAATTTGATGAAAGAAGTTGTTGACAATTTGGAGGATGATGCACCACGTCTGGATTCAATACTTATGCATATGGGAAGTATGTATGCGACGTTGAGCAAATTTGGAAAATCATTGGAAACATATCAAAGGGCTGTCTACATTATGGAGAGGACCTGTGGCAAGGATAGCAGTTTTCTTGTCACGCCCTATCTGGCTATGGCAAAAGCTCTTGGTTCTATGGGAAACGCAACAAAAGCAATAGAGAAATACCAGCGCGCCATTAATCTTTTAGAATCAGAGAGAGGTGCTGAAAGTAAGGACTTGGTTGTACCTTTACTTGGTCTTGGCAATCTTTTACTGAAAGAAGCAAGAGTCGACGATGCAGAAACTCATTTTACTAGGGTGCTTAACATTTATATGAAGTTATATGGACAAAATGATGGAAGAATTGGAATGCCCATGAGTTCTCTAGCCCGAGTGAAGTGCGCTCAAGGGAAGTCGGATGAAGCAATTAATTTGTATAAACGTGCACTTAAGGTCATGTCAGATTCAAAATACATGTCATTGGATGACAATATAATGGAAAAGATGAGGGTTGATCTAGCTGAGTTACTCCATAATGTTGGGAGAGGACAAGAAGGCAGAGAGCTATTGGAGGAGTGCTTATTGATCACTGAGAAGTTCAAAGGAAAGGAGCACCCCAGCTTATTAACAAACATGATAAATCTCGCAACTTCATATTCACAATCAAAGAATTATGTCGAGGCCGAGCGCTTGCTGAGAAGAGTTTTACAAATGATGATAACACAAAAGGGAACTGATGACCAGTCCATCAGCTTTCCCATGTTGCACCTCACAGTTACACTCTACCATTTGAAACAAGATGAAGAAGCAGAGAAACTCGCCCTCGATGTTTTGCGCATCCGGGAGAAGGCATTCGGACAAGATTCTCTCCCTGTTGGTGAGGCTTTGGACTGTTTGGTTTCTATTCAAACCAGACTCGGTAAGGACGAGGATGAGTTACTCGAGCAGCTTAAAAGGGTCCTGAGTATTCAAGAGAAAGAATATGGACATGAGAGTGAGGAAGTTATGTTCACTCTTAAAAAAATTGTATTCTACTTGGATAAGTTAGGGAGAAAAGATGAAAAATTTCCCATGCAGAGAAGATTATCTGTGCTTGGGAAAAAGTATAAGCAAATGATTCATCCATAA 3591 0.4286 MMERSRSKRNYYYNQDYDSETLARTRPRYNYHYSNRYRDAYGGAGGRHLKLDHDAPVTVTTSYRILCNELRTGGVIEKFGGVIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDADGRMPMFSPAQEALLLINEKILESDVEYRVAAEEEYGGGGRNWDRVAARLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPRCVSISEETVQVSGDVNAVKNAVKVISSRLRESQHRDRSHFHGHGHSQEHFLSPDDNYNPHGGPLRLSVEAAAFGSQGSATNARNNNHPSLGAYVANDAQPFYGEDLVFRIVCPVEKVDHIIGESYRFVEFLQNDVGVDIKVTDPIGGSEERIIIITSEEGPDDELFPAQEALLHIQTRIVDLVLDKGNTITTRLVVPSSDIECLDGKYASLSEIKRLTGANIQILPKEERPLCVAKTDELIQIVGEIKAARDAVVEVTSRLRSYLYRDFIQRDTVPPSASLSRMEASSSNTTAPATETSTIYQNSQTVATAVLPSKMETGGSSAEAGNQKDNQLRDNVPIGLNRITVPPVTRSILEVVLPEYAVPRLIARSKSKLAQISELSGANVTLVEDRPDVTEKIIQLSGTPEQTERAQSLLQGFILSILSFVSLSKVSVLSTMEVSSLLLPNPSLSFTPFRSSKELSHMLSLYELKSMNFFSLSNQIQKHNYIIPIRAISKFSLAGTTPRSDTYSAPNHFPRMGNFERELEELFDEVKRLVRIGNKNDAIDLLNANYEAVKERLNGTTKGIEEAAILDVLALGYLAVGDFKFVDSLLNLMKEVVDNLEDDAPRLDSILMHMGSMYATLSKFGKSLETYQRAVYIMERTCGKDSSFLVTPYLAMAKALGSMGNATKAIEKYQRAINLLESERGAESKDLVVPLLGLGNLLLKEARVDDAETHFTRVLNIYMKLYGQNDGRIGMPMSSLARVKCAQGKSDEAINLYKRALKVMSDSKYMSLDDNIMEKMRVDLAELLHNVGRGQEGRELLEECLLITEKFKGKEHPSLLTNMINLATSYSQSKNYVEAERLLRRVLQMMITQKGTDDQSISFPMLHLTVTLYHLKQDEEAEKLALDVLRIREKAFGQDSLPVGEALDCLVSIQTRLGKDEDELLEQLKRVLSIQEKEYGHESEEVMFTLKKIVFYLDKLGRKDEKFPMQRRLSVLGKKYKQMIHP 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0578 1196 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 552 630 IPR036612 GO:0003723
Lal17g0578 1196 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 160 244 IPR036612 GO:0003723
Lal17g0578 1196 MobiDBLite consensus disorder prediction 240 258 - -
Lal17g0578 1196 ProSiteProfiles Type-1 KH domain profile. 560 624 - -
Lal17g0578 1196 SMART tpr_5 1030 1063 IPR019734 GO:0005515
Lal17g0578 1196 SMART tpr_5 818 851 IPR019734 GO:0005515
Lal17g0578 1196 SMART tpr_5 860 893 IPR019734 GO:0005515
Lal17g0578 1196 SMART tpr_5 944 977 IPR019734 GO:0005515
Lal17g0578 1196 SMART tpr_5 902 935 IPR019734 GO:0005515
Lal17g0578 1196 SUPERFAMILY TPR-like 819 1059 IPR011990 GO:0005515
Lal17g0578 1196 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 307 369 IPR036612 GO:0003723
Lal17g0578 1196 Gene3D Tetratricopeptide repeat domain 733 989 IPR011990 GO:0005515
Lal17g0578 1196 SMART kh_6 396 470 IPR004087 GO:0003676
Lal17g0578 1196 SMART kh_6 162 238 IPR004087 GO:0003676
Lal17g0578 1196 SMART kh_6 559 629 IPR004087 GO:0003676
Lal17g0578 1196 SMART kh_6 312 385 IPR004087 GO:0003676
Lal17g0578 1196 SMART kh_6 59 140 IPR004087 GO:0003676
Lal17g0578 1196 Gene3D K Homology domain, type 1 59 142 IPR036612 GO:0003723
Lal17g0578 1196 Gene3D K Homology domain, type 1 557 630 IPR036612 GO:0003723
Lal17g0578 1196 Pfam KH domain 167 234 IPR004088 GO:0003723
Lal17g0578 1196 Pfam KH domain 563 625 IPR004088 GO:0003723
Lal17g0578 1196 Gene3D Tetratricopeptide repeat domain 990 1195 IPR011990 GO:0005515
Lal17g0578 1196 ProSiteProfiles Type-1 KH domain profile. 60 132 - -
Lal17g0578 1196 Gene3D - 312 473 - -
Lal17g0578 1196 Coils Coil 873 900 - -
Lal17g0578 1196 ProSiteProfiles TPR repeat profile. 818 851 IPR019734 GO:0005515
Lal17g0578 1196 ProSiteProfiles TPR repeat profile. 860 893 IPR019734 GO:0005515
Lal17g0578 1196 ProSiteProfiles Type-1 KH domain profile. 163 233 - -
Lal17g0578 1196 CDD PCBP_like_KH 62 135 - -
Lal17g0578 1196 CDD KH-I 562 625 - -
Lal17g0578 1196 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 390 477 IPR036612 GO:0003723
Lal17g0578 1196 Pfam MalT-like TPR region 819 1100 IPR041617 -
Lal17g0578 1196 Gene3D K Homology domain, type 1 162 242 IPR036612 GO:0003723
Lal17g0578 1196 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 4 533 - -
Lal17g0578 1196 ProSiteProfiles Type-1 KH domain profile. 313 380 - -
Lal17g0578 1196 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 4 533 - -
Lal17g0578 1196 MobiDBLite consensus disorder prediction 485 507 - -
Lal17g0578 1196 CDD PCBP_like_KH 167 234 - -
Lal17g0578 1196 MobiDBLite consensus disorder prediction 240 271 - -
Lal17g0578 1196 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 60 111 IPR036612 GO:0003723
Lal17g0578 1196 Coils Coil 726 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0578 Lal-Chr17 4107819 4117416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0578 K21444 - gmx:100804167 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0578 17 4107819 4117416 Lal17g0578 17 4107819 4117416 ECH
Lal17g0578 17 4107819 4117416 Lal21g0572 21 4246737 4252825 LSH
Lal17g0578 17 4107819 4117416 Lal4g0504 4 3622305 3631998 LSH