Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0453 ATGAGTCGCCGAGGAATTGACGACGACGAATTCGACGACGAGGAGGAGGAAGAAGAAGAAGAGCACGTCGCCGATTTCGATGAGGAGGAGGCGGAGGAAGAGGAGGAAGTAGGTCGCGGCGGAAGGAAGAGGAGGAGATCTGGTTTCTTTGATGAGGATGCGGAGGAGGTTGATGACGATGAAGAGGAAGAGGATGATGATGATGATGATGATGAGGATTTCGATGGTGGAGGTGGTGGTAGGAAGCGACAGCGCAAGAAGCACTCTGCTTCTTCTTTCTTTGATGAAGAGGCTAAAGTCGATTCTGATGAGGAAGAGGAAGAGGAGGAAGGAGAGGATGACTTCATTGTTGACGGTGGAGCTGATCTTCCGGAGGAACGTGATGGTAGAAGTGTACCCCGTGGTCGTATGCTGCCACATGGTGAAGAAGACCATGAAGATCTTGAAGCTATGGCCAGAAGAATTCAACAAAGGTATGCAAGGCGTCAGTCAGATTATGATGAAGAAGCTACTGATGTAGAACAACAAGCTCTTTTGCCATCTGTGAGAGATCCAAAGCTCTGGATGGTGAAATGTGCGATTGGTCGTGAGCGGGAAACTGCTGTTTGCCTTATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCAGGTCAGTTGTTGCTCTCGATCATCTCAAAAACTACATATATGTGGAAGCAGATAAAGAGGCCCATGTGAGAGAGGCTTGCAAAGGTCTACGCAACATTTTCGGCCAAAAAATAACGCTTGTTCCCATCAGAGAAATGACCGATGTTCTGTCAGTTGAAAGCAAAGCTATTGACCTTGCCAGAGATACTTGGGTCAGAATGAAGATTGGGACATATAAAGGGGACCTTGCCAAAGTAGTGGATGTCGACAATGTGCGGCAGAGGGTTACTGTGAAACTAATTCCAAGGATAGACTTACAAGCCCTTGCAAGCAAATTGGAAGGTAGAGAAGTTGTAAAGAAGAAGGCGTATGTTCCTCCTCCTCGTTTTCTGAATGTCGAAGAAGCTAGGGAACTGCACATCCGTGTGGAGCATAGACGTGATACCTATGGGGAACGATTTGATGCAATTGGAGGCATGATGTTCAAGGATGGATTCTTATACAAAACAGTATCAATAAAATCCATTAGTGCTCAGAACATCAAACCTACATTTGATGAACTTGAAAAATTCCGTAAACCGGGTGAGAATGGAGATGGTGATGTAGCTAGTCTGTCAACCTTATTTGCAAACAGAAAGAAAGGGCATTTTTTGAAAGGCGATGCTGTCATTGTGATCAAGGGTGACTTAAAGAATTTGAAGGGGTGGGTGGAGAAAGTTGACGAAGATAATATTCATATAAGGCCAGAAATTAAGGGTCTACCAAAAACTCTTGCGGTGAACGAAAAGGAACTTTGTAAATATTTTGAACCTGGAAACCATGTTAAGGTTGTTTCTGGTGGTCAAGAGGGTGCCACTGGAATGGTTGTGAAGGTGGAGCAGCATGTCCTGATTTTAATATCTGATACAACAAAGGAACATGTCCGTGTGTTTGCTGATGATGTTGTGGAAAGTTCTGAAGTGACCACTGGAATTACAAGCATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGATAATTTGAGCTTTGGTGTGATAATATGTGTAGAAAGTGAAGCATTTCAGGTTCTTAAGGGTGTTCCTGACCGAGCTGAAGTTGTTCTTGTTAAATTTAGAGAGGTCAAATCTAAATTAGATAAGAAGATAAGTGTGCAAGACAGATTCAAAAATACAGTTTCAGCAAAGGATGTTGTGCGAGTTGTTGAGGGTCCCTGCAAAGGCAAACAAGGTCCTGTGGAGCACATATATAGAGGAATCTTGTTCATCTGTGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGTTAAGGCTCAATCATGTGTGGTTGTAGGAGGTTCACGTTCCAATGGGGACATAAATGGTAATGCCTACTCTAGATTTGCCAGCCTCAGAACCCCCTCTCGTATTCCACAGTCCCCGAGTAGGTTTTCTAGGGGAGGGCCTCCAATTCATTCTGGAGGAAGGGGCAGAGGTGGAAGGGGGCACGATGGTCTAACAGGTTCAACAGTTAAAGTACGCCAGGGTCCCTACAAAGGTTATCGTGGGCGTGTTATTGATGTTAAAGGCACATCAGTTCGGGTTGAATTGGAGTCCCAGATGAAGGTTGTGACTGGTAGTGTTGATGCAGTTGATCGCAACCATATATCTGACAATGTGGCTGTAACCCCATATCGTGAATCTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACTCCTTTACATCCATATATGACTCCTATGAGAGATCCTGGAGCGACCCCTATTCACGACGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCAAGGGATAACTGGGAGGATGGAAATCCAGGCTCTTGGGGAGCAAGCCCACAGTACCAGCCAGGAAGCCCTGTTTCACGGCCATATGAAGCTCCAACTCCTGGTGCTGGTTGGGCCAGCACTCCTGGTGGCAATTATAATGAGGCTGGGACTCCCCGGGACAGTTCTGCCTTTGCCAATGCTCCAAGTCCATATTTACCATCAACACCTGGTGGGCAGCCTCTGACACCAAATTCAGTGTCTTATCTTCCTGGCACCCCTGGAGGACAACCGATGACTCCAGGAACTGGTGGCCTGGACATGATGTCCCCAGTTTTAGGTGGGAACAGCGAAGGGCCTTGGTTTATGCCAGACATATTAGTTAATGTACACAAGCCCGGAGAGGAATCAGTTGGAGTTATAAGAGAGGTTCTTACGGATGGCTCTTGCAGGGTAGCTCTCGGATCTAGCGGTAACGGTGAAACAATAACTGCCCTTCCTAGTGAAATGGAGGCTGTGGTACCAAGGAAATCAGATAAAATAAAAATAATGGGTGGCTCATTGTGTGGTGCCACAGGCAAGTTGATCGGTGTGGATGGTACTGATGGTATTGTAAAGGTAGATGACACTTTGGATGTCAAGATCTTAGACTTAGTTATTTTGGCAAAATTAGCTCAAGCTTGA 3138 0.4567 MSRRGIDDDEFDDEEEEEEEEHVADFDEEEAEEEEEVGRGGRKRRRSGFFDEDAEEVDDDEEEEDDDDDDDEDFDGGGGGRKRQRKKHSASSFFDEEAKVDSDEEEEEEEGEDDFIVDGGADLPEERDGRSVPRGRMLPHGEEDHEDLEAMARRIQQRYARRQSDYDEEATDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVVALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALASKLEGREVVKKKAYVPPPRFLNVEEARELHIRVEHRRDTYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFLKGDAVIVIKGDLKNLKGWVEKVDEDNIHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVSGGQEGATGMVVKVEQHVLILISDTTKEHVRVFADDVVESSEVTTGITSIGDYELRDLVLLDNLSFGVIICVESEAFQVLKGVPDRAEVVLVKFREVKSKLDKKISVQDRFKNTVSAKDVVRVVEGPCKGKQGPVEHIYRGILFICDRHHLEHAGFICVKAQSCVVVGGSRSNGDINGNAYSRFASLRTPSRIPQSPSRFSRGGPPIHSGGRGRGGRGHDGLTGSTVKVRQGPYKGYRGRVIDVKGTSVRVELESQMKVVTGSVDAVDRNHISDNVAVTPYRESRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPVSRPYEAPTPGAGWASTPGGNYNEAGTPRDSSAFANAPSPYLPSTPGGQPLTPNSVSYLPGTPGGQPMTPGTGGLDMMSPVLGGNSEGPWFMPDILVNVHKPGEESVGVIREVLTDGSCRVALGSSGNGETITALPSEMEAVVPRKSDKIKIMGGSLCGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQA 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0453 1045 Gene3D - 275 317 IPR014722 -
Lal4g0453 1045 MobiDBLite consensus disorder prediction 897 911 - -
Lal4g0453 1045 MobiDBLite consensus disorder prediction 36 52 - -
Lal4g0453 1045 CDD NGN_Euk 186 268 IPR039385 -
Lal4g0453 1045 CDD KOW_Spt5_4 606 648 IPR041977 -
Lal4g0453 1045 MobiDBLite consensus disorder prediction 678 718 - -
Lal4g0453 1045 Coils Coil 16 36 - -
Lal4g0453 1045 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 28 1043 - -
Lal4g0453 1045 SUPERFAMILY Translation proteins SH3-like domain 470 529 IPR008991 -
Lal4g0453 1045 SMART kow_9 602 629 IPR005824 -
Lal4g0453 1045 SMART kow_9 275 302 IPR005824 -
Lal4g0453 1045 SMART kow_9 478 505 IPR005824 -
Lal4g0453 1045 SMART kow_9 708 735 IPR005824 -
Lal4g0453 1045 SMART kow_9 992 1019 IPR005824 -
Lal4g0453 1045 SMART kow_9 426 453 IPR005824 -
Lal4g0453 1045 MobiDBLite consensus disorder prediction 1 141 - -
Lal4g0453 1045 MobiDBLite consensus disorder prediction 8 35 - -
Lal4g0453 1045 CDD KOW_Spt5_3 478 528 IPR041976 -
Lal4g0453 1045 SUPERFAMILY Translation proteins SH3-like domain 419 457 IPR008991 -
Lal4g0453 1045 ProSitePatterns Ribosomal protein L24 signature. 430 447 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lal4g0453 1045 Gene3D - 481 530 IPR014722 -
Lal4g0453 1045 CDD KOW_Spt5_1 279 316 IPR041973 -
Lal4g0453 1045 MobiDBLite consensus disorder prediction 869 888 - -
Lal4g0453 1045 MobiDBLite consensus disorder prediction 120 141 - -
Lal4g0453 1045 CDD KOW_Spt5_6 986 1043 IPR041980 -
Lal4g0453 1045 Pfam Early transcription elongation factor of RNA pol II, NGN section 186 267 IPR005100 -
Lal4g0453 1045 MobiDBLite consensus disorder prediction 812 922 - -
Lal4g0453 1045 CDD KOW_Spt5_5 707 761 IPR041978 -
Lal4g0453 1045 SMART nusgn_4 184 270 IPR006645 GO:0140673
Lal4g0453 1045 Gene3D - 421 478 IPR014722 -
Lal4g0453 1045 Gene3D - 166 268 IPR036735 GO:0006355
Lal4g0453 1045 MobiDBLite consensus disorder prediction 98 119 - -
Lal4g0453 1045 Gene3D - 694 762 IPR014722 -
Lal4g0453 1045 CDD KOW_Spt5_2 427 477 IPR041975 -
Lal4g0453 1045 Pfam KOW motif 712 741 IPR005824 -
Lal4g0453 1045 Pfam KOW motif 481 523 IPR005824 -
Lal4g0453 1045 MobiDBLite consensus disorder prediction 53 74 - -
Lal4g0453 1045 Pfam Spt5 transcription elongation factor, acidic N-terminal 93 180 IPR022581 -
Lal4g0453 1045 PIRSF Spt5 1 1045 IPR017071 GO:0006357|GO:0032784
Lal4g0453 1045 PANTHER SUPPRESSOR OF TY 5 28 1043 IPR039659 GO:0006357|GO:0032784
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0453 Lal-Chr4 3179499 3187112 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0453 K15172 - gmx:100801380 1682.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0453 4 3179499 3187112 Lal4g0453 4 3179499 3187112 ECH
Lal17g0523 17 3636675 3643800 Lal4g0453 4 3179499 3187112 LSH
Lal21g0542 21 3952012 3961790 Lal4g0453 4 3179499 3187112 LSH