Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal21g0542 | ATGAGTCGCAGAGGAATGGACGATGACGAATTCGACGACGAGGATGAGGAAGAGCAGGTAGCTGATTTCGATGAGGAGGAAGAGGAGAGAGGCGGCGGAAGGAAGAGGAGGAGATCTGGCTTCATTGATGATGATGCAGATGAGGTCGATGAGGACGAAGAGGAAGAGGATGATGATGATGATGAAGATTTCGATGGCGGAGGTGGTGGCCGGAAGCGCCAGAGCAAGAGGAAGTCCGCTGCTTCCTACTTTGATGAAGAGGCGGCTGTTGATTCTGATGAGGAGGAGGAAGAGGAGGAAGGAGAGGATGACTTCATTGTTGACGGTGGAGCTGATCTTCCGGAGGAACGTGATGGAAGTCTGCGTCGTGCCCGTATGCTTCCACATGACGATGAAGACCATGAAGATCTTGAAGCTGTGGCACAAAGCATTCAACAACGGTACGCAAGGCGTCAAGCAGATTATGATGAAGAAGCCACTGATGTAGAACAACAAGCTCTTTTGCCATCTGTTAGGGATCCAAAGCTCTGGATGGTGAAATGTGCAATTGGTCGTGAGCGGGAAACTGCAGTCTGCCTTATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCAGGTCAGTTATTGCTCTAGATCATCTCAAAAACTACCTATATGTGGAAGCAGATAAAGAGTCCCATGTAAGAGAGGCTTGCAAAGGTCTACGCAACATATTTGGTCAAAAAATAACGCTTGTTCCAATTAGAGAAATGACTGATGTTCTGTCAGTTGAAAGTAAAGCTATTGACCTTGCCAGAGATACTTGGGTCAGAATGAAGATTGGGACATATAAAGGGGACCTTGCTAAAGTAGTGGATGTCGACAATGTGCGGCAGAGGGTTACTGTGAAACTAATTCCAAGGATAGACTTACAGGCCCTTGCAAACAAATTGGAAGGTAGAGAAGTTGTAAAGAAGAAGGCATTTGTTCCTCCTCCTCGTTTTCTTAATGTCGAAGAAGCTAGGGAATTGCACATCCGTGTGGAGCATAGACGTGATGCCTACGGTGAACGATTTGATGCAATTGGAGGCATGATGTTCAAGGATGGATTCTTATACAAAACAGTATCAATAAAATCCATTAGTTCTCAGAACATCAAACCTACATTTGATGAGCTTGAAAAATTTCGTAAACCGGGTGAGAATGGAGATGATGATGTAGCTAGTCTGTCAACTTTATTTTCAAACAGAAAGAAAGGGCATTTTTTGAAAGGTGATGCTGTCATCGTGATCAAGGGTGATTTAAAGAATTTGAAGGGCTGGGTAGAGAAAGTTGATGAAGATAATGTTCATATAAGACCAGAAATTAAGGGTCTTCCAAAAACGCTTGCTGTAAATGAAAAGGAACTCTGTAAATATTTTGAACCCGGAAACCATGTTAAGGTTGTTTCTGGTGCTCGAGAGGGTGCCACTGGCATGGTTGTGAAGGTGGAGCAGCATGTCCTGATCTTAGTATCTGATACGACAAAGGAACATATCCGTGTGTTTGCTGATGATGTTGTGGAGAGTTCTGAAGTGACCACTGGAGTTACTAAAATTGGAGACTACGAACTTCGTGATCTTGTACTACTAGATAATTTGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGTGTTCCTGACCGAGCTGAAGTCGTGCTTGTTAAATTGAGAGAGATCAAATGTAAGTTAGATAAGAAAATCAGTGTGCAAGACAGATTCAAAAACACAGTATCAGCAAAGGATGCTGTGAGGATTGTTGAGGGTCCCTGCAAAGGGAAACAAGGTCCGGTGGAGCACATATATAGAGGAATCTTGTTCATCTGTGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGTTAAGGCTCAATCATGTGTAGTTGTGGGAGGTTCACGCTCCAATGGGGACAGAAATGGTGATGCCTACTCAAGATTCGCTAGCCTCAGAACCCCCCCTCGTATTCCACACTCCCCGAGTAGGTTTTCTCGAGGAGGGCCTCCAAATCATTCTGGAGGAAGGGGCAGAGGTGGAAGAGGGCACGACGGTCTTACAGGTTCAACAGTTAAAGTACGCCAGGGTCCTTACAAAGGTTATCGTGGGCGTGTTATAGATGTTAAAGGCACCTCAGTTCGGGTTGAACTGGAGTCCCAAATGAAGGTTGTGACAGTGGACCGCAACCATATATCGGACAATGTAGCTGTAACCCCATATCGTGAATCTCGATACGGGATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACTCCTTTACATCCATATATGACTCCTATGAGAGATCCTGGAGCCACCCCTATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCAAGGGAAAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCAAGTCCACAGTACCAGCCAGGAAGCCCTGCTTCACGGCCATATGAAGCTCCAACTCCTGGTGCTGGTTGGGCCAGCACTCCTGGTGGCAATTATAGCGAGGCTGGGACTCCCCGGGACAGTTCTGCCTATGGTAGCATCATCTGTTATTTGCACCCTGTAGTCAATACCAATGCTCCAAGTCCATATTTACCCTCAACACCTGGTGGGCAGCCTATGACGCCAAATTCAGCATCTTATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGATCTGGTGGTCTGGACATGATGTCCCCAGTTTTAGCTGGGGACAACGAAGGGCCTTGGTTTATACCAGACATATTAGTCAATGTACATAAGCCCGGAGAGGAATCTGTTGGAGTTATACGAGAGCTTCTTCCGGATGGCTCTTGCAGGGTATCTCTTGGATCTAGCGGAAATGGTGAAACGATAACAGCCCTTCCTAGTGAAATGGAAGCTGTAGTGCCAAGGAAATCAGACAAAATAAAAATTATGGGTGGTGCATTGCGTGGTGCCACAGGTAAGTTGATTGGTGTTGATGGTACAGATGGTATTGTAAAGGTAGACGACACTTTGGATGTGAAGATTTTAGACTTAGTTATTTTGGCAAAATTAGCTCAAGCTTGA | 3126 | 0.4565 | MSRRGMDDDEFDDEDEEEQVADFDEEEEERGGGRKRRRSGFIDDDADEVDEDEEEEDDDDDEDFDGGGGGRKRQSKRKSAASYFDEEAAVDSDEEEEEEEGEDDFIVDGGADLPEERDGSLRRARMLPHDDEDHEDLEAVAQSIQQRYARRQADYDEEATDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVIALDHLKNYLYVEADKESHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFLNVEEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISSQNIKPTFDELEKFRKPGENGDDDVASLSTLFSNRKKGHFLKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVSGAREGATGMVVKVEQHVLILVSDTTKEHIRVFADDVVESSEVTTGVTKIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRAEVVLVKLREIKCKLDKKISVQDRFKNTVSAKDAVRIVEGPCKGKQGPVEHIYRGILFICDRHHLEHAGFICVKAQSCVVVGGSRSNGDRNGDAYSRFASLRTPPRIPHSPSRFSRGGPPNHSGGRGRGGRGHDGLTGSTVKVRQGPYKGYRGRVIDVKGTSVRVELESQMKVVTVDRNHISDNVAVTPYRESRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRENWEDGNPGSWGASPQYQPGSPASRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYGSIICYLHPVVNTNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGSGGLDMMSPVLAGDNEGPWFIPDILVNVHKPGEESVGVIRELLPDGSCRVSLGSSGNGETITALPSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQA | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal21g0542 | 1041 | Pfam | KOW motif | 470 | 496 | IPR005824 | - | |
| Lal21g0542 | 1041 | Pfam | KOW motif | 701 | 730 | IPR005824 | - | |
| Lal21g0542 | 1041 | Gene3D | - | 264 | 306 | IPR014722 | - | |
| Lal21g0542 | 1041 | MobiDBLite | consensus disorder prediction | 650 | 707 | - | - | |
| Lal21g0542 | 1041 | PANTHER | SUPPRESSOR OF TY 5 | 23 | 1039 | IPR039659 | GO:0006357|GO:0032784 | |
| Lal21g0542 | 1041 | MobiDBLite | consensus disorder prediction | 45 | 64 | - | - | |
| Lal21g0542 | 1041 | MobiDBLite | consensus disorder prediction | 799 | 861 | - | - | |
| Lal21g0542 | 1041 | Pfam | Early transcription elongation factor of RNA pol II, NGN section | 175 | 256 | IPR005100 | - | |
| Lal21g0542 | 1041 | CDD | KOW_Spt5_6 | 982 | 1039 | IPR041980 | - | |
| Lal21g0542 | 1041 | CDD | KOW_Spt5_5 | 696 | 745 | IPR041978 | - | |
| Lal21g0542 | 1041 | Gene3D | - | 680 | 747 | IPR014722 | - | |
| Lal21g0542 | 1041 | PIRSF | Spt5 | 2 | 1041 | IPR017071 | GO:0006357|GO:0032784 | |
| Lal21g0542 | 1041 | PANTHER | TRANSCRIPTION ELONGATION FACTOR SPT5 | 23 | 1039 | - | - | |
| Lal21g0542 | 1041 | MobiDBLite | consensus disorder prediction | 8 | 26 | - | - | |
| Lal21g0542 | 1041 | CDD | NGN_Euk | 175 | 257 | IPR039385 | - | |
| Lal21g0542 | 1041 | ProSitePatterns | Ribosomal protein L24 signature. | 419 | 436 | IPR005825 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal21g0542 | 1041 | MobiDBLite | consensus disorder prediction | 27 | 44 | - | - | |
| Lal21g0542 | 1041 | CDD | KOW_Spt5_2 | 416 | 466 | IPR041975 | - | |
| Lal21g0542 | 1041 | SUPERFAMILY | Translation proteins SH3-like domain | 459 | 518 | IPR008991 | - | |
| Lal21g0542 | 1041 | Gene3D | - | 155 | 257 | IPR036735 | GO:0006355 | |
| Lal21g0542 | 1041 | SMART | nusgn_4 | 173 | 259 | IPR006645 | GO:0140673 | |
| Lal21g0542 | 1041 | MobiDBLite | consensus disorder prediction | 65 | 84 | - | - | |
| Lal21g0542 | 1041 | CDD | KOW_Spt5_1 | 268 | 305 | IPR041973 | - | |
| Lal21g0542 | 1041 | Pfam | Spt5 transcription elongation factor, acidic N-terminal | 83 | 169 | IPR022581 | - | |
| Lal21g0542 | 1041 | CDD | KOW_Spt5_3 | 467 | 517 | IPR041976 | - | |
| Lal21g0542 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 119 | - | - | |
| Lal21g0542 | 1041 | Gene3D | - | 470 | 519 | IPR014722 | - | |
| Lal21g0542 | 1041 | SMART | kow_9 | 697 | 724 | IPR005824 | - | |
| Lal21g0542 | 1041 | SMART | kow_9 | 591 | 618 | IPR005824 | - | |
| Lal21g0542 | 1041 | SMART | kow_9 | 467 | 494 | IPR005824 | - | |
| Lal21g0542 | 1041 | SMART | kow_9 | 264 | 291 | IPR005824 | - | |
| Lal21g0542 | 1041 | SMART | kow_9 | 988 | 1015 | IPR005824 | - | |
| Lal21g0542 | 1041 | SMART | kow_9 | 415 | 442 | IPR005824 | - | |
| Lal21g0542 | 1041 | CDD | KOW_Spt5_4 | 595 | 637 | IPR041977 | - | |
| Lal21g0542 | 1041 | MobiDBLite | consensus disorder prediction | 87 | 109 | - | - | |
| Lal21g0542 | 1041 | Gene3D | - | 410 | 467 | IPR014722 | - | |
| Lal21g0542 | 1041 | SUPERFAMILY | Translation proteins SH3-like domain | 409 | 446 | IPR008991 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal21g0542 | Lal-Chr21 | 3952012 | 3961790 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal21g0542 | K15172 | - | gmx:100801380 | 1684.08 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal21g0542 | 21 | 3952012 | 3961790 | Lal21g0542 | 21 | 3952012 | 3961790 | ECH | |
| Lal17g0523 | 17 | 3636675 | 3643800 | Lal21g0542 | 21 | 3952012 | 3961790 | LSH | |
| Lal21g0542 | 21 | 3952012 | 3961790 | Lal4g0453 | 4 | 3179499 | 3187112 | LSH |